NIMBioS at the Fair

Suzanne Lenhart (right) presents the senior division awards to Oak Ridge High School seniors Ashley Parks (left) and Samiha Ahsan (center) at the Southern Appalachian Science & Engineering Fair

NIMBioS sponsored two awards for biological research projects using mathematical methods at this year’s Southern Appalachian Science & Engineering Fair. Samiha Ahsan and Ashley Parks, both of Oak Ridge High School, share the senior level prize for their project “Mathematical Modeling of the Diffusion of Cells Through Arterial Walls.” Ahsan became interested in the project because of her interest in life science, and Parks because of her interest in mathematics.

Lily Turski (left), junior level prize winner, poses with her project "Sweating Like a Horse" and Kelly Sturner

The junior level prize went to Lily Turaski of the Blount Home Education Association for her project “Sweating Like a Horse”, where she explored her question of whether horses of darker colors sweated more in the sun to control their body temperature. Turaski demonstrated an advanced understanding of the statistics she used to determine whether her hypothesis was validated.

The prizes included $50 (senior level) or $25 (junior level) plus a certificate and official letter explaining the award. Suzanne Lenhart, NIMBioS Associate Director for Education, Outreach & Diversity and Kelly Sturner, NIMBioS Education & Outreach Coordinator presented the awards at the ceremony last week.

The senior prize-wining project, "Mathematical Modeling of the Diffusion of Cells through Arterial Walls"

Yuzhuo Chu and Ashutosh Wadhwa, NIMBioS Graduate Assistants, helped with the judging.

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The Future Home of NIMBioS: Move Set for April

Future home of NIMBioS at 1122 Volunteer Boulevard

Renovations are nearly complete at the new NIMBioS facilities at 1122 Volunteer Boulevard, and NIMBioS is expected to open for business in the new space on Monday, April 16. The new office space on the first and second floors of the Philander P. Claxton Education Building includes a tiered auditorium, two classrooms, two conference rooms, a meeting room, and a large informal break area that should all enhance the experience of the many visitors and participants in NIMBioS activities.

Blueberry Falls on new NIMBioS grounds

NIMBioS anticipates the addition of technology for video-conferencing and web-casting will improve distance communication and create opportunities for involvement of more people in workshops and tutorials.  Numerous whiteboards placed throughout the space will soon be covered with models and equations as interdisciplinary teams investigate questions in mathematical biology.

There will be plenty of outdoor space to enjoy, including Blueberry Falls (above), which features a small waterfall, blueberry bushes, and a plaque encouraging visitors to renew their spirits with nature. Also, a courtyard will be conveniently located between the main meeting rooms and staff offices.

Boxes for packing have arrived at the current NIMBioS headquarters, and all staff and postdocs must have their packing completed by Friday, April 13. All phone and fax numbers will remain the same. To find NIMBioS’ new location on the campus map, click here.

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NIMBioS Announces New Songwriter-in-Residence: Baba Brinkman

Baba Brinkman

NIMBioS is pleased to announce that educational hip-hop artist Baba Brinkman will be joining NIMBioS as its new Songwriter-in-Residence in April and May.

Brinkman is a Canadian rap artist, writer, actor and tree planter. He is best known for his award-winning shows The Rap Canterbury Tales and The Rap Guide to Evolution, which interpret the works of Chaucer and Darwin for a modern audience.

Brinkman is also a former tree-planter who worked in the Rocky Mountains every summer for more than ten years, personally planting more than one million trees.

Brinkman has a master’s degree in medieval literature from University of Victoria, Canada. His thesis drew parallels between the worlds of hip-hop music and literary poetry.

He has written or co-written five hip-hop theatre shows, winning several awards while performing six full seasons at the Edinburgh Fringe Festival. His Canterbury Tales adaptation earned a sponsorship as a “Literary Ambassador to Schools” from Britain’s Cambridge University English Department in 2005. Brinkman has performed for more than 100 high school and college assemblies from Hong Kong to Australia to Alabama.

At UT, he will perform an excerpt from his Rap Guide to Evolution, which recently finished an extended off-Broadway run. The Rap Guide to Evolution won the prestigious Scotsman Fringe First Award in Edinburgh in 2009, and went on to tour the USA, Australia, and the UK, including three appearances at regional TED conferences and a performance on national TV on The Rachel Maddow Show.

The free performance is scheduled from 7:30 – 9 p.m., Tuesday, April 24, in the UC Auditorium. Brinkman’s DJ “Mr. Simmonds” will join him for the performance.

You can read more about Baba and his art in this New York Times article, “Paying Homage to Darwin in an Unconventional Format: Rap.”

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High School Scholars Visit NIMBioS

Two Tennessee high school students mix beans in a cup to simulate the outbreak of a disease during their visit to NIMBioS.

Tennessee high school students visited NIMBioS last week as a part of the annual Tennessee Junior Science and Humanties Symposium. Suzanne Lenhart, NIMBioS associate director for education, outreach and diversity, spoke to the students and their teacher sponsors about how NIMBioS researchers apply mathematics to solving some of today’s biggest biological questions, including how to manage and control diseases. A hands-on activity called “Outbreak in a Cup,” led by Kelly Sturner, NIMBioS education and outreach coordinator, generated discussion of important components in a disease model. Jennifer Richards, from Hands On and a NIMBioS collaborator, introduced students to data visualization software called Gapminder and led the students in exploring data on malaria around the world. The symposium gave students the opportunity to present their own original scientific research in a public forum, compete for scholarships, and tour labs and facilities on the UT-Knoxville campus and Oak Ridge National Laboratory.

 

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The Story of a Scientific Collaboration: How One Nature Paper Came to Be

Dr. Tony Jhwueng (left) and Dr. R. Tucker Gilman (right)

Having a few linear algebraists as co-workers can come in handy — especially near Halloween — when one is stuck on a knotty mathematical biology problem with no clear solution.

This proved to be the case for NIMBioS postdoctoral fellow Tucker Gilman while he was working on a mathematical model to describe coevolution in multidimensional trait space, which has just been published in Nature. It all transpired on one night near Halloween in 2010.

Gilman began working on the problem with his colleague Scott Nuismer at the University of Idaho when Gilman began his postdoc at NIMBioS in the fall of 2010.

“The original plan was to look at two- and possibly three-dimensional systems,” Gilman said. “When we had done the math for two and three dimensions, there was a clear pattern that looked like it would hold for any number of dimensions. This was an opportunity to take the project from the ‘we found something cool in some models’ level to the ‘we discovered something fundamental about the way nature works’ level.”

But then the research team hit a mathematical roadblock: They could demonstrate numerically that the pattern was almost certainly correct, but could not prove the pattern absolutely. In efforts to find the answer, Gilman, an evolutionary biologist by training, talked to numerous math professors and consulted mathematical texts, but to no avail. “I had run into one of those situations where mathematical intuition is not a substitute for mathematical training. I was stuck,” he said.

NIMBioS colleagues to the rescue.

NIMBioS postdocs and visiting scientists not only work together but also often socialize, and that was the case near Halloween in 2010. Gilman, along with former NIMBioS postdocs Tony Jhwueng, Folashade Agusto, and visiting scientist Dave McCandlish from Duke University, visited a corn maze for some pre-Halloween fun.

“The ride back was about half an hour long, and I noticed I had three really good linear algebraists in a captive audience,” Gilman explained. “I described the pattern I had seen, and asked them how I might prove it would always hold. We threw some ideas around, but really didn’t make much progress. At least, I didn’t think we had.”

But on Monday morning, Jhwueng, now an assistant professor in statistics at Feng-Chia University in Taichung, Taiwan, had some news for Gilman.

“Tony showed up in my office with a formal proof of the pattern we had talked about,” Gilman said. “It was exactly what we needed to go forward. That was the start of the collaboration. After that, Tony fixed another proof Scott and I were stuck on, and checked the ones I had been able to do myself.”

And so together, Gilman, Nuismer and Jhwueng went on to write the paper and got it accepted for publication at Nature. “I am sure we would have gotten the paper published without the collaboration, but probably not in Nature,” Gilman surmised.

Postdoctoral applications at NIMBioS are reviewed three times per year — March 1, Sept. 1, Dec. 11. Selected researchers are offered positions at NIMBioS where they conduct research that is mostly self-directed. For more information about how to apply, visit https://legacy.nimbios.org/postdocs

 

 

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NIMBioS Responds to the Googleopoly

While the Google Empire rolls out controversial changes to its privacy rules today that track users across multiple services, NIMBioS also makes some changes of its own with regard to privacy and usage of our web site — changes that we hope might protect your search habits.

New default settings on Google now allow it to collect and cross-reference a logged-in user’s activity on Google-owned sites on the Internet, such Gmail, YouTube, Google docs, Google maps and of course its sophisticated search engine. It also affects smartphones that run on Google’s Android software.

The changes also give Google permission to share its information with other sites.

At NIMBioS, we use Google Analytics to gather and analyze statistics related to use of our web site, including traffic volumes, operating systems, browser types and screen resolutions. We use this information to monitor and assess the effectiveness and accessibility of our web pages. Google Analytics allows web site owners to opt out of sharing data with other sites, and so we have chosen to do so. Therefore, on the NIMBioS web site, Google Analytics will exclude these data from any automated processes that are not specifically related to operating and improving Google Analytics or protecting the security and integrity of the data.

Google says its new privacy policy will help to streamline a user’s Internet experience, tailoring advertisements based on the user’s activity. However, privacy-protection groups and consumer advocates contend that Google is going too far, gathering too much personal data and sending it to other sites, without a person’s explicit consent.

Respecting our users’ privacy, we at NIMBioS think we have taken the necessary steps to continue to assure some measure of privacy. You can read more about our Privacy Policy and other NIMBioS policies at https://legacy.nimbios.org/governance/policies.

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Lande Visits NIMBioS

Russell Lande (center, black shirt) visits with NIMBioS postdocs (from left) JJ Chai, Tom Ingersoll, Andrew Kanarek, Maud Lélu, Xavier Thibert-Plante, Dan Ryan, Orou Gaoue and Gesham Magombedze

Distinguished theoretical biologist Russell Lande visited NIMBioS yesterday and gave a seminar talk on the topic of phenotypic plasticity. Lande’s talk, “Adaptation to an extraordinary environment by evolution of phenotypic plasticity and genetic assimilation,” filled a packed classroom. Lande was a NIMBioS Postdoctoral Fellows Invited Distinguished Visitor. A Royal Society Research Professor in Natural Sciences at Imperial College London, Lande has won numerous awards for his work, including a MacArthur Fellowship and most recently the Balzan Prize for Theoretical Biology or Bioinformatics, for “pioneering contributions to the development and application of theoretical population biology, including the modern development of the theory of quantitative genetics, and the study of stochastic population dynamics.” For more information on NIMBioS seminars, visit https://legacy.nimbios.org/announcements/seminar_calendar.

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Ngonghala Presents the Buzz on Mosquitos and Malaria

NIMBioS Postdoc Calistus Ngonghala (center, red tie) poses after his talk with a group of Howard University students and faculty

NIMBioS Postdoctoral Fellow Calistus Ngonghala shared his research in modeling mosquito transmission of malaria at Howard University earlier this month. His talk, titled “The role of mosquito demography and nourishment habits on the dynamics of malaria transmission,” was presented to a group of faculty, undergraduate and graduate students during his visit to Washington, DC. By including mosquito population dynamics into his malaria disease model, the model captures natural fluctuations and oscillations known to prevail in malaria dynamics that are hard to attribute to external forcing factors.

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Botesteanu Wins MAA Outstanding Presentation Award

Dana-Adriana Botesteanu, 2011 NIMBioS REU Participant

Dana-Adriana Botesteanu, a participant in NIMBioS’ 2011 REU program, has won an “Outstanding Presentation” award from the Mathematical Association of America for her poster at the Undergraduate Poster Session at the 2012 Joint Mathematics Meetings. Botesteanu’s poster presentation, “How does the effort that a mother bird expends on her offspring depend on the attractiveness of her mate?” was rated within the top 15% of more than 300 posters. The research stemmed from Botesteanu’s research at NIMBioS during the REU program. Botesteanu, a mathematics and French major at Mount Holyoke College, describes her research in this NIMBioS video about REU. Mentors for the team project were Dr. Tucker Gilman, a current NIMBioS postdoctoral fellow, and Dr. Tony Jhwueng, former  postdoctoral fellow at NIMBioS. Other 2012 winners are listed here. Congratulations, Dana!

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Happy Birthday, Darwin! NIMBioS Celebrates at Teacher Workshop

Teachers work together on activities and discuss the challenges and strategies for teaching evolution in their classrooms at the Darwin Day Teacher Workshop.

In honor of Charles Darwin’s birthday last week, NIMBioS participated in a training-the-teacher workshop on strategies for teaching evolution for around 30 local middle and high school teachers in East Tennessee. NIMBioS Education & Outreach Coordinator Kelly Sturner led teachers in an activity demonstrating how half-life and radiometric dating helps scientists determine the absolute age of fossils in rock layers, a major source of evidence for evolution. The activity came from Biology in a Box, and the workshop was a part of UT-Knoxville’s week-long celebration of Darwin Day organised by volunteers from the Ecology and Evolutionary Biology Department.

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