Discover the Black Box’s Secrets on Talking Science

Photo by Kelly Sturner

Our latest post on Talking Science, a project of the radio program NPR’s Science Friday, looks into how scientific inquiry works and the mathematical basis for why it’s so powerful. Adapted with permission from Biology in a Box, this hands-on activity is geared toward 9th-12th grade levels and covers probability and mathematics. In the exercise, students work in groups using the hypothesis-driven scientific method to decide on the possible identity of two mystery objects (from a set of 11 potential objects) in a “Black Box.” More Biology by Numbers posts can be found at the Talking Science website.

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NIMBioS ‘Play’ Participant Plays the Pipes

Dr. Peter Hammerstein performed an organ recital at Cox Auditorium on the University of Tennessee, Knoxville, campus.

NIMBioS friends and colleagues were treated to a organ recital last night by Dr. Peter Hammerstein, an accomplished organist and member of the NIMBioS Working Group on Play. Using the magnificent Opus 15 mechanical-action tracker organ in Cox Auditorium, Hammerstein performed works ranging from traditional pieces such as Bach’s wedding march to works from the Renaissance and the French court of Louis XIV. The organ with its 2,766 pipes was built in 2006 specifically for the Cox Auditorium. Its style and sound mimics the organs from the 17th and 18th centuries in northern Europe.

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Playtime at NIMBioS: New Working Group Takes Play Seriously

Working Group on Play, Evolution, and Sociality, Meeting 1 (Back row, L to R): M. Mangel, B. O'Meara, J. Schank, G. Burghardt, P. Hammerstein, K. Lewis Graham, H. Fouts. (Front row, L to R): S. Dall'Olio, M. Spinka, M. Rehakova, E. Palagi, S. Pellis, B. Smuts, M. Shimada, E. Akçay. Not pictured: M. Bekoff, T. Pellegrini, S. Siviy

Some of the world’s foremost authorities on the social behavior of play are gathered this week at NIMBioS. The new NIMBioS Working Group on Play, Evolution and Sociality aims to use mathematical tools to study the dynamics of play — what the rules are and the evolutionary origins that facilitate and maintain it. Aside from being just a really “fun” topic, the research is also important because it is hoped that a deeper understanding of the rules of social play would help in understanding the play deficits that have been observed in children with neurodevelopmental disorders. Children with autism spectrum disorders, for example, have difficulty in pretend play.* Thus a better understanding of the dynamics of play might lead to better strategies for using play as an educational and therapeutic tool.

What’s unique about this particular research group, like other research activities at NIMBioS, is its interdisciplinary approach to the problem — for the first time, scholars from a range of different fields, from primate behavior to game theory, from neuroscience to child care practices, are gathered at NIMBioS to tackle the issue.

The group, which will meet two to four times at NIMBioS over the next several years, is organized by some stellar scholars including Gordon M. Burghardt (psychology and ecology & evolutionary biology departments, Univ. of Tennessee, Knoxville); Marc Mangel (applied mathematics and statistics, Jack Baskin School of Engineering, Univ. of California, Santa Cruz); Elisabetta Palagi (Primate Center at Univ. of Pisa, Rome); and Sergio M. Pellis (Canadian Centre for Behavioural Neuroscience, Univ. of Lethbridge, Lethbridge, Alberta, Canada).

Also participating is Marc Bekoff, one of the world’s most foremost experts on animal behavior/emotion. In this video, Dr. Bekoff describes about how animals “feel” emotion. In his regular blog on Psychology Today, his most recent post was entitled, “Grief, Mourning, and Broken Hearted Animals.”

Another participant is Jeff Schank (psychology, UC Davis) who has built robots that act like rat pups to study how behavior emerges.

Involving 12-15 participants, NIMBioS Working Groups focus on major scientific questions at the interface between biology and mathematics that require insights from diverse researchers.

Applications for support for NIMBioS Working Groups and NIMBioS Investigative Workshops are considered two times a year with deadlines on March 1 and September 1. All areas of research at the interface of biology and mathematics are considered, but we are especially interested in activities expanding beyond the areas of research supported to date. Potential organizers of activities in areas of molecular biology, cell biology, network biology, immunology and systems biology are particularly encouraged to submit requests for support of Working Groups or Investigative Workshops.

What will you propose?

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*For more about social play and autism, see this article published in Autism.

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NIMBioS Postdoc Visits Cal State San Marcos

NIMBioS Postdoc Xavier Thibert-Plante

NIMBioS Postdoctoral Fellow Xavier Thibert-Plante discussed his research into the process of ecological speciation at a recent talk at California State University San Marcos (CSUSM). Thibert-Plante’s visit is a part of NIMBioS’ education and outreach efforts to partner with minority-serving institutions like CSUSM to foster collaboration in areas of research, science and education. In his talk, “Local adaptation and gene flow shaping biodiversity; numerical simulation studies,” Thibert-Plante explained how he used an individual-based numerical simulation model to address the contribution of natural selection, sexual selection, and environmental differences on the progression of ecological speciation. He found that natural selection greatly influences progress toward ecological speciation, but without the added contribution of sexual selection, speciation could not be achieved.

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A perfect trio of women mathematical biologists

Dr. Julia Arciero

Dr. Anita Layton

Dr. Diana Thomas

Over the last three days, we have posted three videos of three different women pioneering their way in the field of mathematical biology. Dr. Julia Arciero is an assistant professor in the mathematical sciences department at Indiana University-Purdue University Indianapolis developing new models to address problems involving components of the circulatory system and inflammation, as in wound healing and necrotizing enterocolitis. Dr. Arciero visited NIMBioS as a participant of the NIMBioS Investigative Workshop on Modeling Renal Hemodynamics. Dr. Anita Layton is an assistant professor in the math department at Duke University and uses mathematical biology to help understand the functions of the kidney. Dr. Layton was a co-organizer of the Renal Hemodynamics workshop at NIMBioS. Dr. Diana Thomas is an associate professor of mathematics at Montclair State University and uses mathematical biology to help understand obesity. Dr. Thomas was co-organizer of the NIMBioS Investigative Workshop: Mathematical Models of Metabolism and Body Weight Regulation. NIMBioS videos include interviews with top scientists, features on interesting research underway at NIMBioS, and news summaries of special events and programs at NIMBioS. Visit our video page. To participate in a NIMBioS investigative workshop, educational activity, or to request support for your own research, visit our Research and Training Opportunities page.

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New postdoc application deadline fast approaching

Postdocs working hard, having fun at NIMBioS.

The next deadline for applications for postdoctoral scholarship at NIMBioS is barely more than a month away: December 11, 2011. Highest priority will be given to applicants with explicit plans to develop their ability to effectively carry on research at the interface of mathematics and biology. We are particularly interested in requests to support research that integrates diverse fields, requires synthesis at multiple scales, and/or makes use of or requires development of new mathematical/computational approaches. NIMBioS Postdoctoral Fellows are chosen based upon indications that the applicant’s research plans are consistent with the mission of NIMBioS, the applicant has the demonstrated ability to carry out the proposed research, and the opportunities provided through NIMBioS will enhance the capacity for the research to be completed in an efficient and timely manner. An annual stipend of $51,000, full University of Tennessee employee fringe benefits, and an annual travel allowance of $2,000 are provided. To apply, complete the online application and submit a brief project description, references, and CV following the application guidelines.  NIMBioS postdoctoral requests for support are reviewed three times per year: March 1, September 1 and December 11. Selected researchers are offered positions at NIMBioS where they conduct research that is mostly self-directed. Note: All letters of recommendation should be submitted before the request deadline.

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NIMBioS Promotes Diversity in Science

NIMBioS postdoctoral fellow Sharon Bewick (left) with Carlos Botero (NESCent) and Carly Strasser (NCEAS) gave a symposium on climate change at SACNAS.

NIMBioS collaborated with NSF math and biology centers this month to bring exciting programming in modern math and life science to the SACNAS national conference for advancing Hispanics, Chicanos, and Native Americans in science. Postdoctoral fellow Sharon Bewick and Associate Director for Education, Outreach & Diversity Suzanne Lenhart both presented at the Modern Math Workshop, held immediately prior to SACNAS and c0-organized by NIMBioS and the NSF math centers and institutes.  Sessions for undergraduate students centered around how mathematics contributes to our understanding of various scientific topics. Graduate students and recent PhDs attended presentations highlighting topics drawn from the institutes’ upcoming programs, a keynote address, and an informative panel presentation on the 2012-2013 programs and workshops. Bewick and Lenhart also participated in several activities organized by the NSF biology centers at SACNAS including a career mentoring session for undergraduate students called Conversations with Scientists.” Bewick also presented in a symposium titled “Hot Topics in Ecology/Evolution: Climate Change” with two other postdoctoral fellows from NCEAS and NESCent. This year’s conference in San Jose, CA, was the largest in the SACNAS organization’s history, attracting more than 3,600 participants.

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NIMBioS, WIGGIO announce new partnership for cloud collaboration

We recently partnered with Wiggio.com to spearhead a new communication and collaboration tool. The Wiggio Premium application offers groups and organizations a private-labeled collaboration tool and combines Wiggio’s existing services with new advanced features within a closed community. NIMBioS will use this advanced toolkit to connect biological researchers from around the world to collaborate on projects. NIMBioS participants have been using Wiggio’s classic version since 2009 to share their research, ideas, and data. The new partnership upgrades the account with more features. NIMBioS participants who are currently using Wiggio will see the new features next week. Read more.

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Math’s Usefulness to Ecology Presented by Gaoue at Howard U

NIMBioS postdoctoral fellow Orou Gaoue describes the ways people use tropical forest ecosystems during his talk at Howard University.

NIMBioS postdoctoral fellow Orou Gaoue visited Washington, D.C. last week to inspire Howard University students and faculty to think about real-life ecological questions that mathematics can answer. Gaoue gave a colloquium titled “Modeling the short- and long-term consequences of plant harvest by local people” in the mathematics department to which other departments were invited. Gauoe also met with the chair of the biology department and met individually with several graduate students and faculty members. NIMBioS and Howard University have signed a joint agreement to foster collaborations in areas of research, science and education to promote greater diversity in the cadre of researchers working at the interface of biology and mathematics.

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Oh the Possibilities (for Undergraduate Research at NIMBioS)

College students can delve into a variety of different research experiences here at NIMBioS. A column in today’s student newspaper, The Daily Beacon, by NIMBioS Education and Outreach Coordinator Kelly Sturner highlights some of the best, including the summer Research Experience for Undergraduates program. Another opportunity is the annual Undergraduate Research Conference, which was held a few weeks ago. The conference drew more than 100 students from around the country — all ready to talk about their research at the interface of mathematics and biology. “College is a time of great discovery. Undergraduate research is an opportunity for you to make great discoveries in whatever field you are interested in, while also making great discoveries about yourself,” Sturner writes. Sturner also recalls her own journey of discovery as an undergraduate when she landed a research opportunity at Argonne National Laboratory. Read more here.

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