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Models, Data, Software, Websites, & Databases
2019 2018 2016 2015 2014 2013 2012 2011
| Models, Data, Software, Websites, & Databases 2019 | Link |
|---|---|
| de Aguiar MAM, Newman E, Pires M, Boettiger C. 2019, July 13. EcoNetGen: Simulate and Sample from Ecological Interaction Networks (Version v0.2.3). CRAN. | Link |
| R package | Link |
| Worked examples for first-time package users | Link |
2019 2018 2016 2015 2014 2013 2012 2011
| Models, Data, Software, Websites, & Databases 2018 | Link |
|---|---|
| Beckage B et al. 2018. Model code: the PACE model integrated with the CROADS Carbon Cycle model. | pace.zip |
| de Aguiar MAM, Newman E, Pires M, Boettiger C. 2018, August 13. EcoNetGen: Simulate and Sample from Ecological Interaction Networks (Version v0.2.1). Zenodo. | Link |
| R package | Link |
| Worked examples for first-time package users | Link |
2019 2018 2016 2015 2014 2013 2012 2010
| Models, Data, Software, Websites, & Databases 2016 | Link |
|---|---|
| Bapst DW, Wright AM, Matzke NJ, Lloyd GT. 2016. Data from: Topology, divergence dates, and macroevolutionary inferences vary between different tip-dating approaches applied to fossil theropods (Dinosauria). Dryad Digital Repository. | Link |
| Chaudhary et al. 2016. Data from: MycoDB, a global database of plant response to mycorrhizal fungi. Dryad Digital Repository. | Link |
| Gerkin RC. 2016. NeuronUnit: A package for data-driven validation of neuron and ion channel models using SciUnit. | |
| Hamerlinck G, Lemoine NP, Hood GR, Abbott KC, Forbes AA. 2016. Data from: Meek mothers with powerful daughters: effects of novel host environments and small trait differences on parasitoid competition. Dryad Digital Repository. | Link |
| Kawano SM, Economy DR, Kennedy MS, Dean D, Blob RW. 2016. Data: Comparative limb bone loading in the humerus and femur of the tiger salamander, Ambystoma tigrinum: testing the "mixed-chain" hypothesis for skeletal safety factors. Dryad Digital Repository. | Link |
| Matzke NJ, Wright A. 2016. Data from: Inferring node dates from tip dates in fossil Canidae: the importance of tree priors. Dryad Digital Repository. | Link |
2019 2018 2016 2015 2014 2013 2012 2010
| Models, Data, Software, Websites, & Databases 2015 | Link |
|---|---|
| Egizi A, Fefferman NH, Fonseca DM. 2015. Data: Evidence that implicit assumptions of ‘no evolution’ of disease vectors in changing environments can be violated on a rapid timescale. Dryad Digital Repository. | |
| Farrior CE, Rodriguez-Iturbe I, Dybzinski R, Levin SA, Pacala SW. 2015. Data: Decreased water limitation under elevated CO2 amplifies potential for forest carbon sinks. | Link |
| Hoban S, Ghirotto S, Vilaca S, Benazzo A. 2015. Data from: Using ABC and microsatellite data to detect multiple introductions of invasive species from a single source. Dryad Digital Repository. | Link |
| Iwasaki WM, Kawata M, Gavrilets S. 2015. Simulation Program: Evolutionary Diversification in Anolis Lizards. | Link |
| Kingsolver et al. 2015. Data from: Genetic variation, simplicity and evolutionary constraints for function-valued traits. Dryad Digital Repository. | Link |
| Smaldino P. 2015. The diffusion of products in a multigroup environment: An agent-based model in Java. | |
| Utsey K, Estes S, Kalobwe E, Zhao X, Finotti H. 2015. Wolfram Demonstration: Synthetic Fetal Electrocardiogram. |
2019 2018 2016 2015 2014 2013 2012 2010
| Models, Data, Software, Websites, & Databases 2014 | Link |
|---|---|
| Ane C. 2014. R package WGDgc and SPIMAPWGD. | Link |
| Ane C. 2014. iBPP: Bayesian species delimitation integrating genes and traits. | Link |
| Bravo R, Axelrod DE. 2014. VirtualCryptModel020413G: Agent-Based computational model of the colon crypt: Development of a virtual crypt for in-silico experiments. NetLogo Community Models Repository. | Link |
| Dhurandhar et al. 2014. Simple factor calculator based on compensation estimates from the paper published. | Link |
| Ellison LE, Everette AL. 2014. Bat Population Database: An online web application for entering and managing data for NABat. | |
| Friedenberg NA, Shoemaker K, Root B. 2014. RAMAS IRM Version 2.0: Software for risk-based durability assessment. Applied Biomathematics, Setauket, New York. | |
| Hoban et al. 2014. Data from: Comparative evaluation of potential indicators and temporal sampling protocols for monitoring genetic erosion. Dryad Digital Repository. | Link |
| Kershenbaum A, Smuts B, Owens J, Koler-Matznick J, Comiskey J. 2014 March 15. HowlCoder crowdsourcing site. | |
| Velazquez J, Garrahan JP, Eichhorn MP. 2014. Data: IBM Ecology Simulator. | Link |
2019 2018 2016 2015 2014 2013 2012 2010
| Models, Data, Software, Websites, & Databases 2013 | Link |
|---|---|
| Boone J, Slater M. 2013. A generalized population monitoring program to inform the management of free-roaming cats. | |
| Gurarie D. 2013. Mathematica code for "Optimal control of dynamical systems (ODE and PDE)". | |
| Gurarie D. 2013. Reed-Frost SEIR Model (CDF tool for simulating SEIR systems with variable parameters). Wolfram Demonstrations Project. | Link |
| Kershenbaum A, Roch M. 2013 December 9. IPRiT software library. | Link |
| Miller P, ACC&D Cat Population Model Working Group. 2013 March. Completed simulation model of free-ranging cat populations and multiple management scenarios, and accompanying report. ACC&D and the ASPCA (submitted). | |
| Schmidt D, Chen WC, Ostrouchov G, Patel P, R Core Team. 2013. pbdDMAT: An R package update. | Link |
| Schmidt D, Chen WC, Ostrouchov G, Patel P. 2013. pbdBASE: An R package update. | Link |
| Shah P, Fitzpatrick BM, Fordyce JA. 2013 May 3. iteRates: Parametric rate comparison (version 3.1). | Link |
| Tank DC, Eastman JM, Beaulieu JM, Smith SA. 2013. Phylogenetic resources. Data from: Three keys to the radiation of angiosperms into freezing environments. Nature. Dryad Digital. | Link |
| Tank et al. 2013. Taxonomic lookup table containing clade-level mappings for 15.363 genera of Spermatophyta. Data from: Three keys to the radiation of angiosperms into freezing environments. Nature. Dryad Digital. | Link |
| Zanne et al. 2013 December 22. Tree, data, and source code: Three keys to the radiation of angiosperms into freezing environments. | Link |
2019 2018 2016 2015 2014 2013 2012 2010
| Models, Data, Software, Websites, & Databases 2012 | Link |
|---|---|
| Berry et al. 2012. Online Tutorial: Python for Biologists. | Link |
| Turchin P, Storrs CT. 2012. Software: Historical Database of Sociocultural Evolution (SESHAT). | |
| Swat M, Belmonte J, Hmeljak M, Heiland R, Sauro H et al.. 2012. www.compucell3d.org. |
2019 2018 2016 2015 2014 2013 2012 2010
| Models, Data, Software, Websites, & Databases 2010 | Link |
|---|---|
| Liu L. In preparation (2010). Software: Bayesian Estimation of Gene Family Evolution (BEGFE). | |
| Worden L, Schreiber S, Bolnick D. 2010. WorkingWiki research and computation extension for MediaWiki. Developed at McMaster University. | Link |
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From 2008 until early 2021, NIMBioS was supported by the
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