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Publications
2020 2019 2018 2017 2016 2015 2014 2013 2012 2011 2010 2009 2008
| Publications 2020 | Online |
|---|---|
| Ahn S, Rubchinsky LL. 2020. Temporal patterns of dispersal-induced synchronization in population dynamics. Journal of Theoretical Biology 490:110159. | Link |
| Armsworth PR et al. 2020. Allocating resources for land protection using continuous optimization: biodiversity conservation in the United States. Ecological Applications. | Link |
| Beckage B, Lacasse K, Winter JM et al. 2020. The Earth has humans, so why don't our climate models? Climatic Change. https://doi.org/10.1007/s10584-020-02897-x | Link |
| Castonguay FM, Sokolow SH, De Leo GA, Sanchirico JN. 2020. Cost effectiveness of combining drug and environmental treatments for environmentally transmitted diseases. Proc. R. Soc. B 287:20200966. | Link |
| Cavender-Bares J, Gamon J, Townsend P (Eds.) 2020. Remote Sensing of Plant Biodiversity. Springer International Publishing. eBook ISBN:978-3-030-33157-3. Hardcover ISBN:978-3-030-33156-6. DOI:10.1007/978-3-030-33157-3. | Link |
| Jhwueng DC. 2020 Modeling rate of adaptive trait evolution using Cox–Ingersoll–Ross process: An Approximate Bayesian Computation approach. Computational Statistics and Data Analysis. 145:106924. | Online |
| Jhwueng DC, O'Meara BC. 2020. On the matrix condition of phylogenetic tree. Evolutionary Bioinformatics 16:1-13. | Online |
| Jiang J et al. 2020. Pathogens and mutualists as joint drivers of host species coexistence and turnover: Implications for plant competition and succession. The American Naturalist. | Link |
| Jungck JR, Robeva R, Gross LJ. 2020. Mathematical biology education: Changes, communities, connections, and challenges. Bull Math Biol 82, 117. | Link |
| Malagon, DA et al. 2020. Host density and habitat structure influence host contact rates and Batrachochytrium salamandrivorans transmission. Scientific Reports 10:5584. | Link |
| Lerch BA, Dautel KA, Brewer S, Liang A, Siewe N, Flanagan S. 2020. Space, density and extra-pair matings have opposing impacts on male and female reproductive success. Population Ecology. 2020;1-15. | Link |
| Morozov A et al. 2020. Long living transients: Enfant terrible of ecological theory? Physics of Life Reviews 32:55-58. PMID 32278622 DOI: 10.1016/j.plrev.2020.03.002 | Link |
| Morozov A et al. 2020. Long transients in ecology: Theory and applications. Physics of Life Reviews 32:1-40. PMID 31982327 DOI: 10.1016/j.plrev.2019.09.004 | Link |
| Robeva RS, Jungck JR, Gross LJ. 2020. Changing the nature of quantitative biology education: Data science as a driver. Bull Math Biol 82, 127. | Link |
| Schultheis EH, Kjelvik MK. 2020. Using messy, authentic data to promote data literacy & reveal the nature of science. The American Biology Teacher 82(7):439–446. | |
| Taylor RT, Bishop PR, Lenhart S, Gross LJ, Sturner K. 2020. Development of the BioCalculus Assessment (BCA). CBE-Life Sciences Education 19:1. | Link |
2020 2019 2018 2017 2016 2015 2014 2013 2012 2011 2010 2009 2008
| Publications 2019 | Online |
|---|---|
| Bennett AE et al. 2019. Beyond the black box: Promoting mathematical collaborations for elucidating interactions in soil ecology. Ecosphere 10:7:e02799 | Link |
| Carrasco L, Giam X, Papes M, Sheldon KS. 2019. Metrics of Lidar-derived 3D vegetation structure reveal contrasting effects of horizontal and vertical forest heterogeneity on bird species richness. Remote Sensing 11(7):743. | Link |
| Carrasco L, O'Neil AW, Morton RD, Rowland CS. 2019. Evaluating combinations of temporally aggregated Sentinel-1, Sentinel-2 and Landsat 8 for land cover mapping with Google Earth Engine. Remote Sensing 11(3):288. | Link |
| Cavender-Bares J, Gamon J, Townsend JP (eds.) 2019. Remote Sensing of Plant Biodiversity. Springer. DOI: 10.1007/978-3-030-33157-3 | Link |
| Corwin LA, Kiser S, LoRe SM, Miller JM, Aikens ML. 2019. Community college instructors' perceptions of constraints and affordances related to teaching quantitative biology skills and concepts. CBE: Life Sciences Education 18:4. | Link |
| Crawford KM et al. 2019. When and where plant‐soil feedback may promote plant coexistence: a meta‐analysis. Ecology Letters. | Link |
| Crodelle J, Piltz SH, Hagenauer MH, Booth V. 2019. Modeling the daily rhythm of human pain processing in the dorsal horn. PLoS Comput Biol 15(6): e1007106. | Link |
|
de Aguiar MA et al. 2019. Revealing biases in the sampling of ecological interaction networks. PeerJ. 7.
A new R software package, EcoNetGen, developed for this study, can be downloaded here. |
Link |
| Eaton et al. 2019. "Rule of Five" framework for models and modeling to unify mathematicians and biologists and improve student learning. PRIMUS 29(8):799-829. | Link |
| Farrior CE. 2019. Theory predicts plants grow roots to compete with only their closest neighbours. 286. Proc. R. Soc. B. | Link |
| Forbes VE et al. 2019. Predicting impacts of chemicals from organisms to ecosystem service delivery: A case study of endocrine disruptor effects on trout. Science of the Total Environment. 2019 Feb 1;649:949-59. | Link |
| Galic N et al. 2019. Predicting impacts of chemicals from organisms to ecosystem service delivery: A case study of insecticide impacts on a freshwater lake. Science of The Total Environment 682 (2019):426-436. | Link |
| Gostic KM et al. 2019. Mechanistic dose-response modeling of animal challenge data shows that intact skin is a crucial barrier to leptospiral infection. Philosophical Transactions of the Royal Society, B. | Link |
| Hamelin FM et al. 2019. Co-infections by non-interacting pathogens are not independent and require new tests of interaction. PLOS Biology. | Link |
| Hoban S, Dawson A, Robinson JD, Smith AB, Strand AE. 2019. Inference of biogeographic history by formally integrating distinct lines of evidence: Genetic, environmental niche, and fossil. Ecography. | Link |
| Kawano S. 2019. Selection gradients. In Oxford Bibliographies in Evolutionary Biology. Futuyma D (Ed). New York: Oxford University Press, forthcoming. | |
| Kjelvik MK, Schultheis EH. 2019. Getting messy with authentic data: Exploring the potential of using data from scientific research to support student data literacy. CBE Life Sciences Education 18(2): es2. | Link |
| Mack, KML, Eppinga MB, Bever JD. 2019. Plant-soil feedbacks promote coexistence and resilience in multi-species communities. PLOS One. 14(2): e0211572. | Link |
| Muller EB et al. 2019. Regulation of reproductive processes with Dynamic Energy Budgets. Functional Ecology. | Link |
| Norberg et al. 2019. A comprehensive evaluation of predictive performance of 33 species distribution models at species and community levels. Ecological Monographs. | Link |
| Peace A et al. 2019. A highly invasive chimeric ranavirus can decimate tadpole populations rapidly through multiple transmission pathways. Ecological Modelling 410:108777. | Link |
| Pullen RH, Abel SM. 2019. Mechanical feedback enables catch bonds to selectively stabilize scanning microvilli at T-cell surfaces. Molecular Biology of the Cell. | Link |
| Sample C et al. 2019. Quantifying source and sink habitats and pathways in spatially structured populations: A generalized modelling approach. Ecological Modelling 407:108715. | Link |
2020 2019 2018 2017 2016 2015 2014 2013 2012 2011 2010 2009 2008
| Publications 2018 | Online |
|---|---|
| Allman ES, Degnan JH, Rhodes JA. 2018. Split probabilities and species tree inference under the multispecies coalescent model. Bulletin of Mathematical Biology 80:64-103. | Link |
| Barradas I, Caja Rivera RM. 2018. Cutaneous leishmaniasis in Peru using a vector‐host model: Backward bifurcation and sensitivity analysis. Mathematical Methods in the Applied Sciences 41(5): 1908-1924. | Link |
| Bassett DS, Zurn P, Gold JI. 2018. On the nature and use of models in network neuroscience. Nature Reviews Neuroscience 19: 566-78. | Link |
| Beckage B et al. 2018. Linking models of human behavior and climate alters projected climate change. Nature Climate Change. | Link |
| Bieri JA et al. 2018. A guide to calculating habitat‐quality metrics to inform conservation of highly mobile species. Natural Resource Modeling 31(1): e12156. | Link |
| Chang C, Cruyff MJLF, Giam X. 2018. Examining conservation compliance with randomized response technique analyses. Conservation Biology. | Link |
| Chang CH, Drohan SE. 2018. Should I shoot or should I go? Simple rules for prey selection in multi-species hunting systems: Dietary thresholds to manage hunting. Ecological Applications. 10.1002/10.1002/eap.1796. | Link |
| Christoph J et al. 2018. Electromechanical vortex filaments during cardiac fibrillation. Nature 555:667-672. | Link |
| Ciocanel MV, Stephien TL, Sgouralis I, Layton AT. 2018 A multicellular vascular model of the renal myogenic response. Processes 6(7), 89. | Link |
| Couvreur V, Ledder G, Way DA, Muller EB, Manzoni S, Russo SE. 2018. Water transport through tall trees: A vertically-explicit, analytical model of xylem hydraulic conductance. Plant, Cell, and Environment 41:1821–1839. | Link |
| Day JD, Cockrell C, Namas R, Zamora R, An G, Vodovotz Y. 2018. Inflammation and disease: Modelling and modulation of the inflammatory response to alleviate critical illness. Current Opinion in Systems Biology 12:22-29. | Link |
| de Aguiar et al. 2018 May 14-18. Workshop on Spatial and Temporal Dynamics of Ecological Networks. International Centre for Theoretical Physics-South American Institute for Fundamental Research, Sao Paulo, Brazil. | Link |
| Dogan G, Glowacki L, Rusch H. 2018. Spoils division rules shape aggression between natural groups. Nature Human Behaviour 2:322–326 | Link |
| Eppinga MB et al. 2018. Frequency-dependent feedback and plant community coexistence. Nature Ecology and Evolution. | Link |
| Feng X, Ackerly D, Dawson T, Manzoni S, Skelton R, Vico G, Thompson SE. 2018. The ecohydrological context of drought and classification of plant responses. Ecology Letters 21(11):1723-1736. DOI: 10.1111/ele.13139 | Link |
| Gaggiotti OE et al. 2018. Diversity from genes to ecosystems: A unifying framework to study variation across biological metrics and scales. Evolutionary Applications. | Link |
| Gomulkiewicz R, Kingsolver JG, Carter PA, Heckman N. 2018. Variation and evolution of function-valued traits. Annual Review of Ecology, Evolution and Systematics 49:139-164. | Link |
| Hastings A et al. 2018. Transient phenomena in ecology. Science 7:361(6406). DOI: 10.1126/science.aat6412. | Link |
| Hunter ME, Hoban SM, Bruford MW, Segelbacher G, Bernatchez L. 2018. Next‐generation conservation genetics and biodiversity monitoring. Evolutionary Applications 11(7): 1029-34. | Link |
| Huyvaert K et al. 2018. Challenges and opportunities developing mathematical models of shared pathogens of domestic and wild animals. Veterinary Sciences 5(4):92. | Link |
| Lam AR, Stigall AL, Matzke NJ. 2018. Dispersal in the Ordovician: Speciation patterns and paleobiogeographic analyses of brachiopods and trilobites. Palaeogeography, Palaeoclimatology, Palaeoecology, 489: 147-165. | Link |
| Munoz LM et al. 2018. Discordant alternans as a mechanism for initiation of ventricular fibrillation in vitro. Journal of the American Heart Association 7(17): e007898. | Link |
| Murphy CA et al. 2018. Linking adverse outcome pathways to dynamic energy budgets: A conceptual model. In: A Systems Biology Approach to Advancing Adverse Outcome Pathways for Risk Assessment (pp. 281-302). Springer, Cham. | |
| Murphy et al. 2018. Incorporating sub-organismal processes into dynamic energy budget models for ecological risk assessment. Integrated Environmental Assessment and Management. | Link |
| O'Regan SM. 2018. How noise and coupling influence leading indicators of population extinction in a spatially extended ecological system. Journal of Biological Dynamics 12(1): 211-241. | Link |
| O'Regan SM, Burton DL. 2018. How stochasticity influences leading indicators of critical transitions. Bulletin of Mathematical Biology 80(6): 1630-1654. | Link |
| Pantha B, Cross A, Lenhart S, Day J. 2018. Modeling the macrophage-anthrax spore interaction: Implications for early host-pathogen interactions. Mathematical Biosciences 305:18–28. | Link |
| Pereira et al. 2018. Rio Report - A Roadmap for Leptospirosis Research and Health Policies based on Country Needs. Revista Panamericana de Salud Publica 41:e131. Link | |
| Poudel R, Jumpponen A, Kennelly MM, Rivard CL, Gomez-Montano L, Garrett KA. 2018. Rootstocks shape the rhizobiome: Rhizosphere and endosphere bacterial communities in the grafted tomato system. Appl. Environ. Microbiol. AEM-01765. | Link |
| Russo IR, Hoban S, Bloomer P, Kotzé A, Segelbacher G, Rushworth I, Birss C, Bruford MW. 'Intentional Genetic Manipulation' as a conservation threat. 2018. Conservation Genetics Resources 2018:1-1. | Link |
| Sample C et al. 2018. A general modeling framework for describing spatio-temporal population dynamics. Ecology and Evolution 8(1):493-508. | Link |
| Smith AB, Godsoe W, Rodríguez-Sánchez F, Wang HH, Warren D. 2018. Niche estimation above and below the species level. Trends in Ecology & Evolution. | Link |
| Smith-Ramesh LM. 2018. Predators in the plant–soil feedback loop: aboveground plant‐associated predators may alter the outcome of plant–soil interactions. Ecology letters. | Link |
| Truchado P, Hernandez N, Gil MI, Ivanek R, Allende A. 2018. Correlation between E. coli levels and the presence of foodborne pathogens in surface irrigation water: Establishment of a sampling program. Water Research 128:226-233. | Link |
| Wiederholt et al. 2018. Estimating the per-capita contribution of habitats and pathways in a migratory network. Ecography. |
2020 2019 2018 2017 2016 2015 2014 2013 2012 2011 2010 2009 2008
| Publications 2017 | Online |
|---|---|
| Abdelrazec A, Gumel AB. 2017. Mathematical assessment of the role of temperature and rainfall on mosquito population dynamics. Journal of Mathematical Biology 74(6): 1351. | Link |
| Baker CM, Armsworth PR, Lenhart SM. 2017. Handling overheads: Optimal multi-method invasive species control. Theoretical Ecology. doi:10.1007/s12080-017-0344-1 | Link |
| Balduzzi et al. 2017. Reshaping plant biology: qualitative and quantitative plant morphology. Frontiers in Plant Science. | Link |
| Baron et al. 2017. Synthesis Centers as Critical Research Infrastructure. Bioscience 67(8): 750. | Link |
| Bintz J, Lenhart S, Lanzas C. 2017. Antimicrobial stewardship and environmental decontamination for the control of Clostridium difficile transmission in healthcare settings. Bulletin of Mathematical Biology 79(1): 36. | Link |
| Bucini G, Beckage B, Gross LJ. 2017. Climate seasonality, fire and global patterns of tree cover. Frontiers of Biogeography. | Link |
| Bucksch A et al. 2017. Morphological plant modeling: unleashing geometric and topological potential within the plant sciences. Frontiers in plant science 8:900. | Link |
| Bush MB, Correa-Metrio A, van Woesik R, Shadik CR, McMichael CNH. 2017. Human disturbance amplifies Amazonian El Nino-Southern oscillation signal. Global Change Biology. | Link |
| Caruso CM et al. 2017. What are the environmental determinants of phenotypic selection? A meta-analysis of experimental studies. The American Naturalist. 2017 Sep 1;190(3):000-000. | Link |
| Cho E. Submitted 2017. A new formula for the volume of a simplex. International Electronic Journal of Pure and Applied Mathematics. | |
| Coppinger et al. 2017. Studying audience effects in animals: what we can learn from human language research. Animal Behaviour 124: 161. | Link |
| Delavaux CS, Smith-Ramesh LM, and Kuebbing SE. 2017. Beyond nutrients: A meta-analysis of the diverse effects of arbuscular mycorrhizal fungi on plants and soils. Ecology 8(98): 2111. | Link |
| De Leo et al. 2017. A novel framework to account for ecological drivers in the control and elimination of environmentally transmitted disease: a modelling study. Lancet 389(5): 5. | Link |
| Delmas et al. 2017. Analyzing ecological networks of species interactions. bioRxiv 112540. | Link |
| De Silva KR, Tuoc VP, Lenhart S. 2017. Advection control in parabolic PDE systems for competitive populations. Discrete and Continuous Dynamical Systems-Series B 22(3): 1049. | Link |
| De Silva KR, Eda S, Lenhart S. 2017. Modeling environmental transmission of map infection in dairy cows. Mathematical Biosciences and Engineering 14(4): 1001. | Link |
| Earl JE, Zollner PA. 2017. Advancing research on animal-transported subsidies by integrating animal movement and ecosystem modelling. Journal of Animal Ecology 86(5): 987. | Link |
| Earl JE et al. 2017. Quantitative tools for implementing the new significant portion of the range definition for the Endangered Species Act. Conservation Biology. | Link |
| Erickson RA et al. 2017 Jun 7. Defining and classifying migratory habitats as sources and sinks: The migratory pathway approach. Journal of Applied Ecology. doi.10.1111/1365-2664.12952 | Link |
| Falcon-Lezama et al. 2017. Analysis of spatial mobility in subjects from a Dengue endemic urban locality in Morelos State, Mexico. PLoS ONE 12(2): e0172313. | Link |
| Flanagan SP, Forester BR, Latch EK, Aitken SN, Hoban S. 2017. Guidelines for planning genomic assessment and monitoring of locally adaptive variation to inform species conservation. Evol utionary Applications. | Link |
| Flanagan SP, Jones AG. 2017 May 9. Constraints on the FST–heterozygosity outlier approach. Journal of Heredity. | Link |
| Flanagan SP, Jones AG. 2017. Genome-wide selection components analysis in a fish with male pregnancy. Evolution. | Link |
| Forbes et al. 2017. A framework for predicting impacts on ecosystem services from (sub) organismal responses to chemicals. Environmental Toxicology and Chemistry 36(4): 845. | Link |
| Garzón A, Grigoriev RO. 2017. Memory effects, transient growth, and wave breakup in a model of paced atrium. Chaos: An Interdisciplinary Journal of Nonlinear Science 27(9): 093917. | Link |
| Gavrilets S, Richerson PJ. 2017. Collective action and the evolution of social norm internalization. Proceedings of the National Academy of Sciences. | Link |
| Garchitorena et al. 2017. Disease ecology, health and the environment: a framework to account for ecological and socio-economic drivers in the control of neglected tropical diseases. Philosophical Transactions Of The Royal Society B-Biological Sciences 1722(372). | Link |
| Godsoe W, Franklin J, Blanchet FG. 2017. Effects of biotic interactions on modeled species' distribution can be masked by environmental gradients. Ecology and Evolution 7(2): 654. | Link |
| Godsoe W, Jankowski J, Holt RD, Gravel D. 2017. Integrating Biogeography with Contemporary Niche Theory. Trends in Ecology and Evolution 7(32): 488. | Link |
| Godsoe et al. 2017. Interspecific interactions and range limits: contrasts among interaction types. Theoretical Ecology. | Link |
| Hamelin FM et al. 2017. The evolution of parasitic and mutualistic plant-virus symbioses through transmission-virulence trade-offs. Virus Research. doi:10/1016/j.virusres.2017.04.011 | Link |
| Hampton SE et al. 2017. Best practices for virtual participation in meetings: Experiences from synthesis centers. The Bulletin of the Ecological Society. | Link |
| Hilker FM et al. 2017. Modeling virus coinfection to inform management of maize lethal necrosis in Kenya. Phytopathology. | Link |
| Holden et al. 2017. BUMPER v1.0: a Bayesian user-friendly model for palaeo-environmental reconstruction. Geoscientific Model Development 10(1): 483. | Link |
| Holekamp KE, Benson-Amram S. 2017. The evolution of intelligence in mammalian carnivores. Interface Focus 7.3 20160108 | Link |
| Holzman R, Hulsey CH. 2017. Mechanical Transgressive Segregation and the Rapid Origin of Trophic Novelty. Scientific Reports 7: 40306. | Link |
| Hopkins JB III, Ferguson JM, Tyers DB, Kurle CM. 2017. Selecting the best stable isotope mixing model to estimate grizzly bear diets in the Greater Yellowstone Ecosystem. PLoS ONE 12(5): e0174903. doi:10.1371/journal.pone.0174903 | Link |
| Jost L, Archer F, Flanagan S, Gaggiotti O, Hoban S, Latch E. Accepted 2017. Differentiation measures for conservation genetics. Evolutionary Applications. | Link |
| Kapur M, Franklin EC. 2017. Simulating future climate impacts on tropical fisheries: are contemporary spatial fishery management strategies sufficient? Canadian Journal of Fisheries and Aquatic Sciences. | Link |
| Keller et al. 2017. Predicting human olfactory perception from chemical features of odor molecules. Science:355:6327:820-826. doi:10/1126/science.aal2014 | Link |
| Kershenbaum et al. 2017. Measuring acoustic complexity in continuously varying signals: How complex is a wolf howl? Bioacoustics. | |
| LaRiviere J, Kling D, Sanchirico JN, Sims C, Springborn M. 2017. The treatment of uncertainty and learning in the economics of natural resource and environmental management. Review of Environmental Economics and Policy. rex021 | Link |
| Lawing AM, Eronen JT, Blois JL, Graham CH, Polly PD. 2017. Community functional trait composition at the continental scale: the effects of non-ecological processes. Ecography 40(5): 651. | Link |
| Layton A, Laura MA (eds.). 2017. Women in Mathematical Biology. Proceedings from the Research Collaboration Workshop, NIMBioS, Knoxville, June 2015. Association for Women in Mathematics Series, vol 8. DOI 10.1007/978-3-319-60304-9 | Link |
| Lee et al. 2017. Model distinguishability and inference robustness in mechanisms of cholera transmission and loss of immunity. Journal of Theoretical Biology 420: 68. | Link |
| Levy B, Collins C, Lenhart S, Stiver W. 2017. Evaluating wild hog preferences to guide control strategies in the Great Smoky Mountains National Park. Natural Resource Modeling 30(3): e12132. | Link |
| Li M, Duncan K, Topp CN, Chitwood DH. 2017. Persistent homology and the branching topologies of plants. American Journal of Botany 104 (3): 349. | Link |
| Li et al. 2017. Persistent homology: a tool to universally measure plant morphologies across organs and scales. bioRxiv. | Link |
| Lowry et al. 2017. Breaking RAD: An evaluation of the utility of restriction site associated DNA sequencing for genome scans of adaptation. Molecular Ecology Resources 17(2): 142. | Link |
| Lowry et al. 2017. Responsible RAD: Striving for best practices in population genomic studies of adaptation. Molecular Ecology Resources. | Link |
| Luo et al. 2017. Transient dynamics of terrestrial carbon storage: mathematical foundation and its applications. Biogeosciences 14(1): 145. | Link |
| Magombedze G, Shiri T, Eda S, Stabel JR. 2017. Inferring biomarkers for Mycobacterium avium subsp. paratuberculosis infection and disease progression in cattle using experimental data. Scientific Reports 7: 44765. | Link |
| Massol et al. 2017. How life-history traits affect ecosystem properties: effects of dispersal in meta-ecosystems. Oikos 126(4): 532. | Link |
| McAvoy TJ, Mays R, Johnson NG, Salom SM. 2017. The Effects of Shade, Fertilizer, and Pruning on Eastern Hemlock Trees and Hemlock Woolly Adelgid. Forests 5(8): 156. | Link |
| Mohammed-Awel J, Zhao RJ, Numfor E, Lenhart S. 2017. Management strategies in a malaria model combining human and transmission-blocking vaccines. Discrete and Continuous Dynamical Systems-Series B 22(3): 977. | Link |
| Mohammed-Awel J, Numfor E. 2017. Optimal insecticide-treated bed-net coverage and malaria treatment in a malaria-HIV co-infection model. Journal of Biological Dynamics 11(1): 160. | Link |
| Moody KN et al. 2017. Contrasting post-settlement selection results in many-to-one mapping of high performance phenotypes in the Hawaiian waterfall-climbing goby Sicyopterus stimpsoni. Evolutionary Ecology. | Link |
| Numfor E, Hilker FM, Lenhart S. 2017. Optimal culling and biocontrol in a predator-prey model. Bulletin of Mathematical Biology 79(1): 88. | Link |
| Okuneye KO, Velasco-Hernandez JX, Gumel AB. 2017. The "unholy" Chikungunya-Dengue-Zika trinity: A theoretical analysis. Journal of Biological Systems 25(4): 545-585. | Link |
| Okuneye K, Gumel AB. 2017. Analysis of a temperature- and rainfall-dependent model for malaria transmission dynamics. Mathematical Biosciences 287: 72. | Link |
| Pellis SM, Burghardt GM. 2017. Play and exploration. In Call J (ed.), Burghardt BM, Pepperberg I, Snowdon C, Zentall T (assoc. eds.), APA handbook of comparative psychology: Concepts, History, and Methods 1:699-722. Washington, DC: American Psychological Association. | |
| Perez-Escobar et al. 2017. Recent origin and rapid speciation of Neotropical orchids in the world's richest plant biodiversity hotspot. New Phytologist 2(215): 891. | Link |
| Pullen RH, Abel S. 2017. Catch bonds at T cell interfaces: Impact of surface reorganization and membrane fluctuations. Biophysical Journal 113(1): 120-131. | Link |
| Rusch H, Gavrilets S. 2017. The logic of animal intergroup conflict: A review. Journal of Economic Behavior and Organization. | Link |
| Santiago E. Under review (2017). Simulation of a multihost-multistrain mathematical model for leptospirosis. | |
| Schneider et al. 2017. The use of chemoprophylaxis after floods to reduce the occurrence and impact of leptospirosis outbreaks. International Journal of Environmental Research and Public Health 6(14): 594. | Link |
| Sgouralis I, Nebenfuhr A, Maroulas V. 2017. A Bayesian topological framework for the identification and reconstruction of subcellular motion. SIAM Journal on Imaging Sciences 2(10): 871. | Link |
| Shaw AK, Peace A, Power AG, Bosque‐Pérez NA. 2017. Vector population growth and condition‐dependent movement drive the spread of plant pathogens. Ecology 98(8):2145-2157. | Link |
| Sheldon KS, Zhao L, Chuang A, Panayotova IN, Miller LA and Bourouiba L. 2017. Revisiting the physics of spider ballooning. IN Women in Mathematical Biology (pp. 163-178). Springer, Cham. | Link |
| Shih PM, Hemp J, Ward LM, Matzke NJ, Fischer WW. 2017. Crown group Oxyphotobacteria postdate the rise of oxygen. Geobiology 15(1): 19. | Link |
| Siepielski AM et al. 2017. Precipitation drives global variation on natural selection. Science 355(6328): 959-62. | Link |
| Smith-Ramesh LM. 2017. Book Review: Leslie Anthony, The aliens among us: How invasive species are transforming the planet – and ourselves. Biological Invasions. | Link |
| Smith-Ramesh LM. 2017. Invasive plant alters community and ecosystem dynamics by promoting native predators. Ecology. | Link |
| Smith-Ramesh LM, Reynolds HL. 2017. The next frontier of plant–soil feedback research: unraveling context dependence across biotic and abiotic gradients. Journal of Vegetation Science. | Link |
| Soto-Trejo F, Matzke NJ, Schilling EE, Massana KA, Oyama K, Lira R, Dávila P. 2017. Historical biogeography of Florestina (Asteraceae: Bahieae) of dry environments in Mexico: evaluating models and uncertainty in low-diversity clades. Botanical Journal of the Linnean Society 185(4):497–510. | Link |
| Sturner K, Bishop P, Lenhart SM. 2017. Developing collaboration skills in team undergraduate research experiences. PRIMUS: Problems, Resources, and Issues in Mathematics Undergraduate Studies 27(3):370-388). doi:10.1080/10511970.2016.1188432. | Link |
| Thomas-Sharma S et al. July 2017. A risk assessment framework for seed degeneration: Informing an integrated seed health strategy for vegetatively propagated crops. Phytopathology | Link |
| Tolkacheva EG, Zhao X, Zlochiver S, Mori Y. 2017. Computational and mathematical methods in cardiovascular diseases. Computational and Mathematical Methods in Medicine. | Link |
| Volz LJ, Welborn BL, Goebel MS, Gazzaniga MS, Grafton ST. 2017. Egoistic Altruism: a modality dependent framework for moral decision making. PNAS. Submitted. | Link |
| Vulinec et al. 2017. Buckyballs and bats: trace evidence points to trophic interactions. Frontiers in Ecology and the Environment 15: 108. | Link |
| Waring TM, Goff SH, Smaldino PE. 2017. The coevolution of economic institutions and sustainable consumption via cultural group selection. Ecological Economics. | Link |
| Wiederholt R, Mattsson BJ, Thogmartin WE, Runge MC, Diffendorfer JE, Erickson RA, Federico P, López-Hoffman L, Fryxell J, Norris DR, Sample C. 2017 Jun 1. Estimating the per‐capita contribution of habitats and pathways in a migratory network: a modelling approach. Ecography. | Link |
| Whitehouse H et al. 2017. The evolution of extreme cooperation via shared dysphoric experiences. Scientific Reports 7: 44292. | Link |
| Zhang GY, Basharat U, Matzke N, Franz NM. 2017. Model selection in statistical historical biogeography of Neotropical insects-The Exophthalmus genus complex (Curculionidae: Entiminae). Molecular Phylogenetics and Evolution 109: 226. | Link |
| Zhao L, Panayotova IN, Chuang A, Sheldon KS, Bourouiba L, Miller LA. 2017. Flying spiders: Simulating and modeling the dynamics of ballooning. In: Women in Mathematical Biology 2017 (179-210). Springer, Cham. | |
| Zefferman MR. 2017. Cultural multilevel selection suggests neither large or small cooperative agreements are likely to solve climate change without changing the game. Special Feature: Original Article Applying Cultural Evolution to Sustainability Challenges. Sustainability Science. doi.org/10.1007/s11625-017-0488-3 | Link |
2020 2019 2018 2017 2016 2015 2014 2013 2012 2011 2010 2009 2008
| Publications 2016 | Online |
|---|---|
| Abboud et al. 2016. Computational Analysis Supports an Early, Type 17 Cell-Associated Divergence of Blunt Trauma Survival and Mortality. Critical Care Medicine 44(11): e1074. | Link |
| An G et al. 2016. Optimization and control of agent-based models in biology: A perspective. Bulletin of Mathematical Biology 79: 63. | Link |
| Arriaga J, Sanchez H, Vallejo EE, Hedley R, Taylor CE. 2016. Identification of Cassin's Vireo (Vireo cassinii) individuals from their acoustic sequences using an ensemble of learners. Neurocomputing 175(Part B): 966-979. | Link |
| Asih et al. 2016. The Dynamics of HPV infection and cervical cancer cells. Bulletin of Mathematical Biology 78(1): 4-20. | Link |
| Atta-Boateng A. 2016. Morphological Plant Modeling: Unleashing geometric and topologic potential within the plant sciences. | |
| Baez J, Harte J, Harper M. 2016. Special issue: Information and entropy in biological systems. Entropy. | Link |
| Baez JC, Pollard BS. 2016. Relative entropy in biological systems. Entropy 18(2): 46. | Link |
| Baggio JA, Hillis V. 2016. Success bias imitation increases the probability of effctively dealing with ecological disturbances. Proceedings of the 2016 Winter Simulation Conference. | Link |
| Balduzzi et al. 2016. Reshaping plant biology: Qualitative and quantitative descriptors for plant morphology. Frontiers in Plant Sciences special issue on Plant Morphological Modeling. | |
| Bapst DW, Wright AM, Matzke NJ, Lloyd GT. 2016. Topology, divergence dates, and macroevolutionary inferences vary between different tip-dating approaches applied to fossil theropods (Dinosauria). Biology Letters 12(7): 20160237. | Link |
| Barocas A, Golden HN, Harrington M, McDonald DB, Ben-David M. 2016. Coastal latrine sites as social information hubs and drivers of river otter fission-fusion dynamics. Animal Behavior, 120: 103. | Link |
| Bar-Ziv E, Ilany A, Demartsev V, Barocas A, Geffen E, Koren L. 2016. Individual, social, and sexual niche traits affect copulation success in a polygynandrous mating system. Behavioral Ecology and Sociobiology 70: 901. | Link |
| Beaulieu JM, O'Meara BC. 2016. Detecting hidden diversification shifts in models of trait-dependent speciation and extinction. Systematic Biology 65(4): 583-601. | Link |
| Bode M, Sanchirico JN, Armsworth PR. 2016. Returns from matching management resolution to ecological variation in a coral reef fishery. Proceedings of the Royal Society B: Biological Sciences 283(1826). | Link |
| Breeschoten T, Doorenweerd C, Tarasov S, Vogler AP. 2016. Phylogenetics and biogeography of the dung beetle genus Onthophagus inferred from mitochondrial genomes. Molecular Phylogenetics and Evolution 105: 86. | Link |
| Burghardt GM, Albright JD, Davis KM. 2016. Motivation, development and object play: Comparative perspectives with lessons from dogs. Behaviour 153(6-7): 727-747. | Link |
| Chaudhary et al. 2016. MycoDB, a global database of plant response to mycorrhizal fungi. Scientific Data 3: 160028. | Link |
| Chitwood DH, Bucksch A (eds.). 2016. Plant morphological modeling: Unleashing geometric and topologic potential within the plant sciences. Frontiers Research Topic. | Link |
| Christley S, Neilan RM, Oremland M, Salinas R, Lenhart S. 2016. Optimal control of sugarscape agent-based model via a PDE approximation model. Optimal Control Applications and Methods. | Link |
| Cordoni G, Palagi E. 2016. Aggression and hierarchical steepness inhibit social play in adult wolves. Behaviour 153(6-7): 727-747. | Link |
| Cornetti L, Benazzo A, Hoban S, Vernesi C, Bertorelle G. 2016. Ancient, but not recent, population declines have had a genetic impact on alpine yellow-bellied toad populations, suggesting potential for complete recovery. Conservation Genetics 17(3): 727-743. | Link |
| Dantzler et al. 2016. Canine distemper outbreak modeled in an animal shelter. Letters in Biomathematics 3(1): 13-28. | Link |
| de Boer et al. 2016. Optimal allocation of leaf epidermal area for gas exchange. New Phytologist 210(4): 1219-1228. | Link |
| Deng Q, Hui D, Wang J, Yu CL, Li C, Reddy KC, Dennis S. 2016. Assessing the impacts of tillage and fertilization management on nitrous oxide emissions in a cornfield using the DNDC model. Journal of Geographical Research: Biogeosciences. | Link |
| Earl et al. 2016. Ranavirus could facilitate local extinction of rare amphibian species. Oecologia. 2016 Oct 1;182(2):611-23. | Link |
| Earl et al. 2016. Effects of timber harvest on small mammal captures in experimental forestry plots. Animal Biology 66(3-4): 347. | Link |
| Eaton et al. 2016. "Rule of Five" framework for models and modeling to unify mathematicians and biologists and improve student learning. PRIMUS. | |
| Erickson RA, Thogmartin WE, Diffendorfer JE, Russell RE, Szymanski JA. 2016. Effects of wind energy generation and white-nose syndrome on the viability of the Indiana bat. PeerJ 4: e2830. | Link |
| Falcon-Lezama JA, Martinez-Vega RA, Kuri-Morales PA, Ramos-Castañeda J, Adams B. 2016. Day-to-day population movement and the management of dengue epidemics. Bulletin of Mathematical Biology 78(10): 2011. | Link |
| Farrior CE, Bohlman SA, Hubbell S, Pacala SW. 2016. Dominance of the suppressed: Power-law size structure in tropical forests. Science 351(6269): 155-157. | Link |
| Ferguson JM, Hopkins JB, Witteveen BH. 2016. Integrating population abundance and diet data to improve inferences on food web dynamics. Proceedings of the Royal Society B. | |
| Fernandez et al. 2016. A genomewide catalogue of single nucleotide polymorphisms in white-beaked and Atlantic white-sided dolphins. Molecular Ecology Resources 16(1): 266-276. | Link |
| Flanagan SP, Rosenqvist G, Jones AG. 2016. Mate quality and the temporal dynamics of breeding in a sex-role-reversed pipefish, S. typhle. Behavioral Ecology and Sociobiology 71: 28. | Link |
| Forbes VE, Galic N. 2016. Next generation ecological risk assessment: Predicting risk from molecular initiation to ecosystem service delivery. Environmental International 91: 215-219. | Link |
| Forde JE, Ciupe SM, Cintron-Arias A, Lenhart S. 2016. Optimal control of drug therapy in a hepatitis b model. Applied Sciences 6(8): 219. | Link |
| Fouts HN, Neitzel CL, Bader LR. 2016. Work-themed play among young children in foraging and farming communities in Central Africa. Behaviour 153(6-7): 663-691. | Link |
| Friedman et al. 2016. MultiCellDS: A standard and a community for sharing multicellular data. bioRxiv 090696. | Link |
| Gavrilets S, Auerbach J, van Vugt M. 2016. Convergence to consensus in heterogeneous groups and the emergence of informal leadership. Scientific Reports 6: 29704Q. | Link |
| Gil et al. 2016. Spatial spread of dengue in a non-endemic tropical city in northern Argentina. Acta Tropica 158: 24-31. | Link |
| Gould BA, Chen Y, Lowry DB. 2016. Pooled ecotype sequencing reveals candidate genetic mechanisms for adaptive divergence and reproductive isolation. Molecular Ecology. | |
| Gravel D, Massol F, Leibold MA. 2016. Stability and complexity in model meta-ecosystems. Nature Communications 7. | Link |
| Gustison ML, Semple S, Ferrer-i-Cancho R, Bergman TJ. 2016. Gelada vocal sequences follow Menzerath’s linguistic law. Proceedings of the National Academy of Sciences. | Link |
| Guven et al. 2016. Hydrogen peroxide induced loss of heterozygosity correlates with replicative lifespan and mitotic asymmetry in Saccharomyces cerevisiae. PeerJ 4: e2671. | Link |
| Guzzetta et al. 2016. Potential Risk of Dengue and Chikungunya Outbreaks in Northern Italy Based on a Population Model of Aedes albopictus (Diptera: Culicidae). PLoS Neglected Tropical Diseases 10(6): e0004762. | Link |
| Hamelin FM, Allen LJ, Prendeville HR, Hajimorad MR, Jeger MJ. 2016. The evolution of plant virus transmission pathways. Journal of Theoretical Biology 396: 75-89. | Link |
| Hamerlinck G, Lemoine NP, Hood GR, Abbott KC, Forbes AA. 2016. Meek mothers with powerful daughters: Effects of novel host environments and small trait differences on parasitoid competition. Oikos. | Link |
| Hebert MP, Allen LJS. 2016. Disease outbreaks in plant-vector-virus models with vector aggregation and dispersal. Discrete and Continuous Dynamical Systems-B. | |
| Hellweger FL, Clegg RJ, Clark JR, Plugge CM, Kreft JU. 2016. Advancing microbial sciences by individual-based modelling. Nature Reviews Microbiology 14(7): 461-471. | Link |
| Hoban et al. 2016. Finding the genomic basis of local adaptation in non-model organisms: Pitfalls, practical solutions and future directions. American Naturalist. | Link |
| Hopkins JB, Ferguson JM, Tyers D, Kurle CM. 2016. A framework for testing competing diet models: A bear necessity. Ecology. | |
| Huang Y, Lechowicz MJ, Zhou D, Price CA. 2016. Evaluating general allometric models: Interspecific and intraspecific data tell different stories due to interspecific variation in stem tissue density and leaf size. Oecologia 180(3): 671-684. | Link |
| Iacona G, Price FD, Armsworth PR. 2016. Predicting the presence and cover of management relevant invasive plant species on protected areas. Journal of Environmental Management 166: 537-543. | Link |
| Iacona GD, Bode M, Armsworth PR. 2016. Limitations of outsourcing on‐the‐ground biodiversity conservation. Conservation Biology. | Link |
| Ingersoll TE, Sewall BJ, Amelon SK. 2016. Effects of white-nose syndrome on regional population patterns of 3 hibernating bat species. Conservation Biology 30(5): 1048. | Link |
| Iwai et al. 2016. Piphillin: Improved Prediction of Metagenomic Content by Direct Inference from Human Microbiomes. PLoS ONE, 11(11): e0166104. | Link |
| Jhwueng DC, Maroulas V. 2016. Adaptive trait evolution in random environment. Journal of Applied Statistics. | Link |
| Jones D. 2016. Socially enforced nepotism: How norms and reputation can amplify kin altruism. PLoS ONE 11(6): e0155596. | Link |
| Kaplan M, Manore C, Bagamian KH. 2016. Agent-based hantavirus transmission model incorporating host behavior and viral shedding heterogeneities derived from field transmission experiments. Letters in Biomathematics 3: 209. | |
| Kawano SM, Economy DR, Kennedy MS, Dean D, Blob RW. 2016. Comparative limb bone loading in the humerus and femur of the tiger salamander, Ambystoma tigrinum: Testing the "mixed-chain" hypothesis for skeletal safety factors. Journal of Experimental Biology 219: 341-353. | Link |
| Kelly MR, Tien JH, Eisenberg MC, Lenhart S. 2016. The impact of spatial arrangements on epidemic disease dynamics and intervention strategies. Journal of Biological Dynamics 10(1): 222-249. | Link |
| Kelly MR, Xing YL, Lenhart S. 2016. Optimal fish harvesting for a population modeled by a nonlinear parabolic partial differential equation. Natural Resource Modeling 29(1): 36-70. | Link |
| Kershenbaum et al. 2016. Disentangling canid howls across multiple species and subspecies: Structure in a complex communication channel. Behavioural Processes 124: 149-157. | Link |
| Koffel T, Daufresne T, Massol F, Klausmeier CA. 2016. Geometrical envelopes: Extending graphical contemporary niche theory to communities and eco-evolutionary dynamics. Journal of Theoretical Biology 407: 271-289. | Link |
| Krivan et al. 2016. A dynamical model for bark beetle outbreaks. Journal of Theoretical Biology, 407: 25-37. | Link |
| Krueger-Hadfield S, Hoban S. 2016. The importance of effective sampling for exploring the population dynamics of haplo-diploid organisms. Journal of Phycology 52: 1-9. | Link |
| Kubatko L, Shah P, Herbei R, Gilchrist MA. 2016. A codon model of nucleotide substitution with selection on synonymous codon usage. Molecular Phylogenetics and Evolution 94: 290-297. | Link |
| Lancaster EP, Lenhart S, Ojogbo EJ, Rekant SI, Scott JR, Weimer H, New JC. 2016. Modeling interventions in the owned cat population to decrease numbers, Knox County, TN. Journal of Applied Animal Welfare Science 19(4): 396-407. | Link |
| Ledbetter A. 2016. The implementation of mathematical modeling in health care and its relation to nursing. Fall 2016 Mathematics Senior Seminar Paper. | |
| LeGrand EK, Day J. 2016. Self-harm to preferentially harm the pathogens within: Non-specific stressors in innate immunity. Proceedings of the Royal Society B 283: 20160266. | Link |
| Leiboff S, DeAllie CK, Scanlon MJ. 2016. Modeling the Morphometric Evolution of the Maize Shoot Apical Meristem. Frontiers in Plant Science 7: 1651. | Link |
| Leinster T, Meckes MW. 2016. Maximizing diversity in biology and beyond. Entropy 18(3): 88. | Link |
| Lenhart S, Xiong J, Yong JM. 2016. Optimal controls for stochastic partial differential equations with an application in population modeling. SIAM Journal on Control and Optimization 54(2): 495-535. | Link |
| Levy B. 2016. Dissertation: Modeling feral hogs in Great Smoky Mountains National Park. | |
| Magombedze G, Eda S, Stabel J. 2016. Predicting the role of IL-10 in the regulation of the adaptive immune responses in Mycobacterium avium subsp. paratuberculosis infections using mathematical models. PLOS One 10(11): e0141539. | Link |
| Magombedze G, Seda S, Marteen E, Koets A. 2016. Can immune response mechanisms explain the fecal shedding patterns of cattle infected with Mycobacaterium avium subspecies paratuberculosis?. PLoS ONE 11(1): e0146844. | Link |
| Magombedze G, Shiri T, Seda S, Stabel J. 2016. Predicting Mycobacterium avium subsp. paratuberculosis infection disease progression using immune markers (Th1 and Th2) in fecal CFU shedding animals. | |
| Mallela A, Lenhart S, Vaidya NK. 2016. HIV-TB co-infection treatment: Modeling and optimal control theory perspectives. Journal of Computational and Applied Mathematics. 2016 Dec 1;307:143-61. | Link |
| Manlove et al. 2016. One health or three? Publication silos among the One Health disciplines. PLoS Biology 14(4): e1002448. | Link |
| Matzke N. 2016. The evolution of antievolution policies after Kitzmiller v. Dover. Science 351(6268): 10-12. | Link |
| Matzke NJ, Wright A. 2016. Inferring node dates from tip dates in fossil Canidae: the importance of tree priors. Biology Letters 12(8). | Link |
| McDaniel MM, Krishna N, Handagama WG, Eda S, Ganusov VV. 2016. Quantifying limits on replication of death, and quiescence of Mycobacterium tuberculosis in mice. Frontiers in Microbiology. | Link |
| McInroe et al. 2016. Robotic and mathematical modeling reveals principles of appendage coordination in terrestrial locomotion. Integrative and Comparative Biology 56: E145. | Link |
| McInroe et al. 2016. Tail use improves soft substrate performance in models of early vertebrate land locomotors. Science. | Link |
| Mesterton-Gibbons M, Dai Y, Goubault M. 2016. Modeling the evolution of winner and loser effects: A survey and prospectus. Mathematical Biosciences 274(2016): 33-44. | Link |
| Mickens R. 2016. Mathematical and numerical comparisons of five single-population growth models. Journal of Biological Dynamics 10(1): 95-103. | Link |
| Milt AW, Gagnolet T, Armsworth PR. 2016. Synergies and tradeoffs among environmental impacts under conservation planning of shale gas surface infrastructure. Environmental Management 57(1): 21-30. | Link |
| Munther et al. 2016. Modeling cross-contamination during poultry processing: Dynamics in the chiller tank. Food Control 59: 271-281. | Link |
| Neilan RM, Christley S, Oremland M, Salinas R, Lenhart S. 2016. Approximation and optimal control of the Sugarscape model using PDEs. Optimal Control, Applications and Methods. | |
| Ngonghala CN, Teboh-Ewungkem MI, Ngwa GA. 2016. Observance of period-doubling bifurcation and chaos in an autonomous ODE model for malaria with vector demography. Theoretical Ecology 9(3): 337. | Link |
| Ngonghala C, Mohammed-Awel J, Zhao R, Prosper O. 2016. Interplay between insecticide-treated bed-nets and mosquito demography: Implications for malaria control. Journal of Theoretical Biology 397(2016): 179–192. | Link |
| Nicol et al. 2016. A management-oriented framework for selecting metrics used to assess habitat- and path-specific quality in spatially structured populations. Ecological Indicators 69: 792-802. | Link |
| Oremland M, DeAngelis C, Susmann H, Twohy E, Laubenbacher R. 2016. A framework for solving optimization problems for agent-based models. | |
| Palagi E, Cordoni G, Demuru E, Bekoff M. 2016. Fair play and its connection with social tolerance, reciprocity and the ethology of peace. Behaviour. | Link |
| Palagi E, Fouts HN. 2016. Motivation of play: From ethological to neurological perspectives. Behaviour 153(6-7): 655-662. | Link |
| Palagi E, Nicotra V, Cordoni G. 2016. Rapid mimicry and emotional contagion in domestic dogs. Royal Society Open Science. | Link |
| Palagi et al. 2016. Rough-and-tumble play as a window on animal communication. Biological Reviews 91: 311-327. | |
| Pantha B, Day J, Lenhart S. 2016. Optimal control applied in an anthrax epizootic model. Journal of Biological Systems 24(4): 495. | Link |
| Parobek CM, Archer FI, DePrenger-Levin ME, Hoban SM, Liggins L, Strand AE. 2016. skeleSim: an extensible, general framework for population genetic simulation in R. Molecular Ecology Resources. | Link |
| Peace A, Poteat MD, Wang H. 2016. Somatic Growth Dilution of a toxicant in a predator–prey model under stoichiometric constraints. Journal of Theoretical Biology 407:198-211. | Link |
| Pedersen EJ, Marleau JN, Granados M, Moeller HV, Guichard F. 2016. Nonhierarchical dispersal promotes stability and resilience in a tritrophic metacommunity. Amerian Naturalist 187(5): E116-E128. | Link |
| Pellis SM, Pellis VC. 2016. Play fighting in Visayan warty pigs (Sus cebifrons): Insights on restraint and reciprocity in the maintenance of play. Behaviour 153(6-7): 727-747. | Link |
| Perez-Velazquez J, Gevertz JL, Karolak A, Rejniak KA. 2016. Microenvironmental Niches and Sanctuaries: a Route to Acquired Resistance. Advances in Experimental Medicine and Biology 936: 149. | Link |
| Pietraszewski D. 2016. How the mind sees coalitional and group conflict: The evolutionary invariances of n-person conflict dynamics. Evolution and Human Behavior. | Link |
| Play, Evolution, and Sociality WG Members. 2016. Behaviour, Volume 153, Special Issue: Motivation of Play. | |
| Pollard BS. 2016. Open Markov processes: A compositional perspective on non-equilibrium steady states in biology. Entropy 18(4). | |
| Poudel R, Jumpponen A, Schlatter DC, Paulitz TC, Gardener BB, Kinkel LL, Garrett KA. 2016. Microbiome networks: A systems framework for identifying candidate microbial assemblages for disease management. Phytopathology 106(10): 1083-1096. | Link |
| Prescott AM, McCollough, FM, Eldreth BL, Binder BM, Abel SM. 2016. Analysis of network topologies underlying ethylene growth response kinetics. Frontiers in Plant Sciences. | |
| Prokop ZM, Drobniak SM. 2016. Genetic variation in male attractiveness: It's time to see the forest for the trees. Evolution. | Link |
| Rao AR, Cecchi GA, Kaplan E (eds). 2016. Towards an integrated approach to measurement, analysis and modeling of cortical networks. Lausanne: Frontiers Media. | Link |
| Read Q, Hoban S, Schweitzer J, Eppinga M, and Bailey J. 2016. Accounting for the nested nature of genetic variation across levels of organization improves our understanding of biodiversity and community ecology. Oikos. | Link |
| Rejniak KA (ed). 2016. Systems biology of tumor microenvironment: Quantitative modeling and simulations. 1st Edition, Vol 936. Springer International Publishing. | Link |
| Rejniak KA. 2016. Circulating Tumor Cells: When a Solid Tumor Meets a Fluid Microenvironment. Advances in Experimental Medicine and Biology 936: 93. | Link |
| Ribeiro TL, Ribeiro S, Copelli M. 2016. Repertoires of spike avalanches are modulated by behavior and novelty. Frontiers in Neural Circuits 10. | Link |
| Rice WR, Friberg U, Gavrilets S. 2016. Sexually antagonistic epigenetic marks that canalize sexually dimorphic development. Molecular Ecology 25(8): 1812–1822. | Link |
| Rodhouse TH, Philippi TE, Monahan WB, Castle KT. 2016. A macroecological perspective on bat conservation in a 2nd-century National Park Service. Ecosphere, 7(11): e01 | Link |
| Rohr JR, Salice CJ, Nisbet RM. 2016. The pros and cons of ecological risk assessment based on data from different levels of biological organization. Critical Reviews in Toxicology. | |
| Rú et al. 2016. Associations between ectomycorrhizal fungi and bacterial needle endophytes in Pinus radiata: Implications for biotic selection of microbial communities. Frontiers in Microbiology. | Link |
| Rua et al. 2016. Home-field advantage? Evidence of local adaptation among plants, soil, and arbuscular mycorrhizal fungi through meta-analysis. BMC Evolutionary Biology 16: 122. | Link |
| Ryan D, Sanchirico JN, Toews C, Armsworth PR. 2016. Implications of policy adjustment costs for fisheries management. Natural Resources Modeling. | |
| Schultz I, Watanabe K. 2016. Ch 16: The development of quantitative AOPs. Cheryl Murphy & Natalia Reyero (eds.), A Systems Biology Approach to Advancing Adverse Outcome Pathways for Risk Assessment. | |
| Sgouralis I, Layton AT. 2016. Conduction of feedback-mediated signal in a computational model of coupled nephrons. Mathematical Medicine and Biology 33(1): 87-106. | Link |
| Sgouralis I, Maroulas V, Layton AT. 2016. Transfer function analysis of dynamic blood flow control in the rat kidney. Bulletin of Mathematical Biology 78(5): 923-960. | Link |
| Sherman et al. 2016. Are college students’ assessments of threat shaped by the dangers of their childhood environment? Journal of Interpersonal Violence 31: 2006. | Link |
| Shizuka D, Farine DR. 2016. Measuring the robustness of network community structure using assortativity. Animal Behaviour 112: 237-246. | Link |
| Sims C, Finnoff D, O’Regan SM. 2016. Public control of rational and unpredictable epidemics. Journal of Economic Behavior & Organization. | Link |
| Siviy SM. 2016. A brain motivated to play: Insights into the neurobiology of playfulness. Behaviour 153(6-7): 819-844. | Link |
| Slater et al. 2016. Impact of the shedding level on transmission of persistent infections in Mycobacterium avium subspecies paratuberculosis (MAP). Veterinary Research 47(1): 38. | Link |
| Smaldino PE, Janssen MA, Hillis V, Bednar J. 2016. Adoption as a social marker: Innovation diffusion with outgroup aversion. Journal of Mathematical Sociology 41(1): 26. | Link |
| Smith et al. 2016. Leadership in mammalian societies: Emergence, distribution, power, and payoff. Trends in Ecology & Evolution 31(1): 54-66. | Link |
| Spinka M, Paleckova M, Rehakova M. 2016. Metacommunication in social play: The meaning of aggression-like elements is modified by play face in Hanuman langurs (Semnopithecus entellus). Behaviour 153(6-7): 727-747. | Link |
| Swedlund AC, Sattenspiel L, Warren A, Meindl RS, and Gumerman GJ III. 2016. Explorations in paleodemography: An overview of the Artificial Long House Valley agent-based modeling project, with new observations on demographic estimation. In Zuckerman MK, Martin D (eds) New Directions in Biocultural Anthropology, Wiley-Blackwell. | |
| Taylor CM, Laughlin AJ, Hall RJ. 2016. The response of migratory populations to phenological change: A Migratory Flow Network modeling approach. Journal of Animal Ecology. 2016 Feb 1. | Link |
| Trisko RK, Sandel AA, Smuts B. 2016. Affiliation, dominance and friendship among companion dogs. Behaviour 153(6-7): 693-725. | Link |
| Van Dam M, Matzke NJ. 2016. Evaluating the influence of connectivity and distance on biogeographic patterns in the Southwestern deserts of North America. Journal of Biogeography. | Link |
| Vernesi et al. 2016. Ecology, environment and evolutionary history influence genetic structure in five mammal species from Italian Alps. Biological Journal of the Linnean Society. | Link |
| Viswanathan R, Liang S, Yang Y, Jungck JR. 2016. Biographer: Visualization of graph theoretical patterns, measurements, and analysis in mathematical biology. In Rubem P Mondaini, Editor. BIOMAT 2015. World Scientific: Singapore, pp. 118-140. | Link |
| Wang et al. 2016. Responses of two nonlinear microbial models to warming and increased carbon input. Biogeosciences 13(4): 887-902. | Link |
| Wang et al. 2016. Responses of two nonlinear microbial models to warming and increased carbon input. Biogesciences. 13 887-902. | Link |
| Weitz JS. 2016. Quantitative viral ecology: Dynamics of viruses and their microbial hosts. Princeton University Press. ISBN: 9780691161549 | Link |
| Wiessner P. 2016. The rift between science and humanism: What's data got to do with it? Current Anthropology, 57(S13): S154-S166. | Link |
| Wigington et al. 2016. Re-examination of the relationship between marine virus and microbial cell abundances. Nature Microbiology, Article number: 15024. | Link |
| Wolpert DH. 2016. The Free Energy Requirements of Biological Organisms. Entropy 18(4): 138 | Link |
| Zefferman MR. 2016. Mothers teach daughters because daughters teach granddaughters: Evolution of sex-biased transmission. Behavioral Ecology. | Link |
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| Publications 2015 | Online |
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| Abbott et al. 2015. Spatial heterogeneity in soil microbes alters outcomes of plant competition. PLoS One 10(5): e0125788. | Link |
| Agusto FB, Gumel AB, Parham PE. 2015. Qualitative assessment of the role of temperature variations on malaria transmission dynamics. Journal of Biological Systems 23(4): 597-630. | Link |
| Akcay E. 2015. Evolutionary models of mutualisms. In: Bronstein J (ed.), Mutualism, Oxford University Press. | |
| Albert R, Robeva R. 2015. Signaling Networks: Asynchronous Boolean models. In Robeva R (ed) Algebraic and Discrete Mathematical Methods for Modern Biology, Academic Press, pp. 65-91. | |
| Anderson et al. 2015. Abundance and phenology patterns of two pond-breeding salamanders determine species interactions in natural populations. Oecologia 177(3): 761-773. | Link |
| Auerbach J, Kanarek AR, Burghardt GM. 2015. To play or not to play? That’s a resource abundance question. Adaptive Behavior 23(6): 354-361. | Link |
| Ayers C, Armsworth P, Brosi B. 2015. Determinism as a statistical metric for ecologically important recurrent behaviors with trapline foraging as a case study. Behavioral Ecology and Sociobiology 69(8): 1395-1404. | Link |
| Bauer JT, Mack KLM, Bever JD. 2015. Plant-soil feedbacks as drivers of succession: Evidence from remnant and restored tallgrass prairies. Ecosphere 6(9): article 158. | |
| Beaulieu JM, O'Meara BC, Crane P, Donoghue MJ. 2015. Heterogeneous Rates of Molecular Evolution and Diversification Could Explain the Triassic Age Estimate for Angiosperms. Systematic Biology 64(5): 869-878. | Link |
| Beaulieu JM, O'Meara BC. 2015. Extinction can be estimated from moderately sized molecular phylogenies. Evolution 69(4): 1036-1043. | Link |
| Bell HC, Bell GD, Schank JA, Pellis SM. 2015. Evolving the tactics of play fighting: Insights from simulating the “keep away game” in rats. Adaptive Behavior 23: 371-380. | Link |
| Benazzo A, Ghirotto S, Vilaca ST, Hoban S. 2015. Using ABC and microsatellite data to detect multiple introductions of invasive species from a single source. Heredity, (2015): 1-11. | Link |
| Berner D, Thibert-Plante X. 2015. How mechanisms of habitat preference evolve and promote divergence with gene flow. Journal of Evolutionary Biology 28(9): 1641-1655. | Link |
| Bissonnette et al. 2015. Coalitions in theory and reality: A review of pertinent variables and processes. Behaviour 152(1): 1-56. | Link |
| Boettiger et al. 2015. Optimal management of a stochastically varying population when policy adjustment is costly. Ecological Applications. | Link |
| Botta F, Eriksen C, Fontaine MC, Guillot G. 2015. Enhanced computational methods for quantifying the effect of geographic and environmental isolation on genetic differentiation. Methods in Ecology and Evolution 6(11): 1270-1277. | Link |
| Bowden TS, Ferguson JM, Ward RV, Taper ML, Willey DW. 2015. Breeding season home range and habitat use of Mexican Spotted Owls (Strix occidentalis lucida) Below the South Rim of Grand Canyon National Park. The Wilson Journal of Ornithology 127(4): 678-689. | Link |
| Burghardt L, Metcalf J, Donohue K. 2015. A cline in seed dormancy helps conserve the environment experienced during reproduction across the range of A. thaliana. American Journal of Botany 103(1): 47-59. | Link |
| Cai YJ, Huang JH, Maroulas V. 2015. Large deviations of mean-field stochastic differential equations with jumps. Statistics & Probability Letters 96: 1-9. | Link |
| Carvalho BM, Rangel EF, Ready PD, Vale MM. 2015. Ecological niche modelling predicts southward expansion of Lutzomyia (Nyssomyia) flaviscutellata (Diptera: Psychodidae:Phlebotominae), vector of Leishmania (Leishmania) amazonensis in South America, under climate change. PLoS ONE 10(11): e0143282. | Link |
| Castro-Ibanez I, Gil MI, Tudela JA, Ivanek R, Allende A. 2015. Assessment of microbial risk factors and impact of meteorological conditions during production of baby spinach in the Southeast of Spain. Food Microbiology 49: 173-181. | Link |
| Chen S, Ilany A, White BJ, Sanderson MW, Lanzas C. 2015. Spatial-temporal dynamics of high-resolution animal networks: What can we learn from domestic animals?. PLOS One 10(6): e01292. | |
| Chen S, Lee C, Sanderson M, Lanzas C. 2015. Transmissibility of multiple serotype shiga-toxigenic Escherichia coli in feedlots. | |
| Cho EC. 2015. Application of algebraic topology to data analysis. Seoul National University, South Korea. | |
| Ciocanel V, Stepien TL, Edwards A, Layton AT. 2015. Modeling autoregulation of the afferent arteriole of the rat kidney. AWM proceedings for NIMBioS WS for Women in Mathematical Biology. | |
| Cooper JK, Spencer M, Bruno JF. 2015. Stochastic dynamics of a warmer Great Barrier Reef. Ecology 96(7): 1802-1811. | Link |
| Cordoni G, Palagi E. 2015. Aggression and hierarchical steepness inhibit social play in adult wolves. Behaviour. | Link |
| Cornetti L, Ficetola GF, Hoban S, Vernesi C. 2015. Genetic and ecological data reveal species boundaries between viviparous and oviparous lizard lineages. Heredity 115(6): 517-526. | Link |
| Crawley C. 2015. Modeling the effects of storm surges on coastal vegetation. In H. Kaper and C. Rousseau (Eds), Mathematics of Planet Earth (pp. 193-4). Philadelphia: Society for Industrial and Applied Mathematics. | |
| Day JD, LeGrand EK. 2015. Synergy of local, regional, and systemic stressors for host defense against pathogens. Journal of Theoretical Biology 367:39-48. | Link |
| Day JD, Metes DM, Vodovotz Y. 2015. Mathematical modeling of early cellular innate and adaptive immune responses to ischemia/reperfusion injury and solid organ allotransplantation. Frontiers in Immunology. | Link |
| Day SW, Higham TE, Holzman R, Van Wassenbergh S. 2015. Morphology, kinematics, and dynamics: The mechanics of suction feeding in fishes. Integrative and Comparative Biology 55(1): 21-35. | Link |
| Dembo M, Matzke NJ, Mooers AO, Collard M. 2015. Bayesian analysis of a morphological supermatrix sheds light on controversial fossil hominin relationships. Proceedings of the Royal Society B 282(1812): 133-141. | Link |
| Donahue MJ, Karnauskas M, Toes C, Paris CB. 2015. Location isn’t everything: Timing of spawning aggregations optimizes larval replenishment. PLoS One 10(6): e0130694. | Link |
| Donohue K, Burghardt LT, Runcie D, Bradford KJ, Schmitt J. 2015. Applying developmental threshold models to evolutionary ecology. Trends in Ecology & Evoluiton 30(2): 66-77. | Link |
| Dorazio RM, Connor EF, Askins RA. 2015. Estimating the effects of habitat and biological interactions in an avian community. PLoS ONE 10(8): e0135987. | Link |
| Dornburg A, Moore J, Beaulieu JM, Eytan RI, Near TJ. 2015. The impact of shifts in marine biodiversity hotspots on patterns of range evolution: Evidence from the Holocentridae (squirrelfishes and soldierfishes). Evolution 69(1): 146-161. | Link |
| Durand S, Schank JC. 2015. The evolution of social play by learning to cooperate. Adaptive Behavior 23: 340-353. | Link |
| Earl JE, Semlitsch RD. 2015. Effects of tannin source and concentration from tree leaves on two species of tadpoles. Environmental Toxicology and Chemistry 34(1): 120-126. | Link |
| Earl JE, Whiteman HH. 2015. Are commonly used fitness predictors accurate? A meta-analysis of amphibian size and age at metamorphosis. Copeia 103(2):297-309. | Link |
| Edelaar P, et al. 2015. Shared genetic diversity across the global invasive range of the monk parakeet suggests a common restricted geographic origin and the possibility of convergent selection. Molecular Ecology 24(9): 2164-2176. | Link |
| Edwards S. 2015. Phylogenetic evidence of selection at reproductive genes in promiscuous songbirds. | |
| Egizi A, Fefferman NH, Fonseca DM. 2015. Evidence that implicit assumptions of 'no evolution' of disease vectors in changing environments can be violated on a rapid timescale. Philosophical Transactions of the Royal Society B: Biological Sciences 370 (1665). | Link |
| Eisenberg S, Rutten V, Koets AP. 2015. Dam Mycobacterium avium subspecies paratuberculosis (MAP) infection status does not predetermine calves for future shedding when raised in a contaminated environment: A cohort study. Special Issue of Veterinary Research 46:70. | Link |
| Erickson et al. 2015. Assessing local population vulnerability with branching process models: An application to wind energy development. Ecosphere 6(12): 1-14. | Link |
| Farrior CE, Rodriguez-Iturbe I, Dybzinski R, Levin SA, Pacala SW. 2015. Decreased water limitation under elevated CO2 amplifies potential for forest carbon sinks. PNAS. | Link |
| Ferguson et al. 2015. An updated perspective on the role of environmental autocorrelation in animal populations. Theoretical Ecology. | Link |
| Ferguson J, Ponciano JM. 2015. Evidence and implications of higher order scaling in the environmental variation of animal population growth. Proceedings of the National Academy of Sciences. | Link |
| Franca et al. 2015. D2 dopamine receptor regulation of learning, sleep and plasticity. European Neuropsychopharmacology 25(4): 493-504. | |
| Franz M, Altmann J, Alberts SC. 2015. Knockouts of high-ranking males have limited impact on baboon social networks. Current Zoology 61: 107–113. | Link |
| Ganusov V, Klinkenberg D, Bakker D, Koets A. 2015. Evaluating contribution of the cellular and humoral immune responses to the control of shedding of Mycobacterium avium spp. paratuberculosis in cattle. Special Issue of Veterinary Research 46:62. | Link |
| Gao J, Hu J, Liu F, Cao Y. 2015. Multiscale entropy analysis of biological signals: A fundamental bi-scaling law. Frontiers in Computational Neuroscience 9: 64. | Link |
| Gaoue OG, Jiang J, Ding W, Agusto FB, Lenhart S. 2015. Optimal harvesting strategies for timber and non-timber forest products in tropical ecosystems. Theoretical Ecology. | |
| Gaoue OG, Ngonghala CN, Jiang J, Maud L. 2015. Towards a mechanistic understanding of the synergistic effects of harvesting timber and non-timber forest products. Methods in Ecology and Evolution. | Link |
| Gaoue OG. 2015. Transient dynamics reveal the importance of early life survival to the response of a tropical plant to harvest. Journal of Applied Ecology 53(1): 112-119. | Link |
| Gavrilets S. 2015. Collective action and the collaborative brain. Journal of the Royal Society Interface 12(102): article 20141067. | Link |
| Gavrilets S. 2015. Collective action problem in heterogeneous groups. Philosophical Transactions of the Royal Society B-Biological Sciences 370(1683). | Link |
| Gerkin RC, Castro JB. 2015. The number of olfactory stimuli that humans can discriminate is still unknown. eLife 4: e08127. | Link |
| Ghosh-Dastidar U, Lenhart S. 2015. Modeling the Effect of Vaccines on Cholera Transmission. Journal of Biological Systems 23(2). | |
| Ghosh-Dastidar U. 2015. Modeling the effect of vaccines on cholera transmission. Journal of Biological Systems 23(2): 323-338. | Link |
| Gilchrist MA, Chen WC, Shah P, Landerer CL, Zaretzki R. 2015. Estimating Gene Expression and Codon-Specific Translational Efficiencies, Mutation Biases, and Selection Coefficients from Genomic Data Alone. Genome Biology and Evolution 7(6): 1559-1579. | Link |
| Gilman RT, Kozak G. 2015. Learning to speciate: The biased learning of mate preferences promotes adaptive radiation. Evolution 69(11): 3004-3012. | |
| Godsoe W, Murray R, Plank MJ. 2015. Information on biotic interactions improves transferability of distribution models. The American Naturalist 185(2): 281-290. | Link |
| Godsoe W, Murray R, Plank MJ. 2015. The effect of competition on species’ distributions depends on coexistence, rather than scale alone. Ecography 38(11): 1071-1079. | Link |
| Gonzalez-Forero M. 2015. Stable eusociality via maternal manipulation when resistance is costless. Journal of Evolutionary Biology 28(12): 2208-2223. | Link |
| Gorecki P, Eulenstein O. 2015. Gene tree diameter for deep coalescence. IEEE-ACM Transactions on Computational Biology and Bioinformatics 12(1): 155-165. | Link |
| Gray MJ, Brunner JL, Earl JE, Ariel E. 2015. Design and analysis of ranavirus studies: Surveillance and assessing risk. In: M.J. Gray and V.G. Chinchar, eds. Ranaviruses: Lethal Pathogens of Ectothermic Vertebrates, pg 209-240, Springer. | |
| Greening BR, Pinter-Wollman N, Fefferman NH. 2015. Higher-order interactions: Understanding the knowledge capacity of social groups using simplicial sets. Current Zoology 61(1): 114-127. | Link |
| Grohn Y, Koets A (eds.). 2015. Modeling Johne's disease: From the inside out. Special Issue of Veterinary Research. | Link |
| Grunloh N, Mangel M. 2015. State-dependent behavioral theory and the evolution of play. Adaptive Behavior 23: 362-370. | Link |
| Hoban S, Strand A, Fraga N, Richards C, Schlarbaum S. 2015. Developing quantitative seed sampling protocols using simulations: A reply to comments from Guja et al. and Guerrant et al.. Biological Conservation 184: 469-470. | Link |
| Hoban S, Strand A. 2015. Ex situ seed collections will benefit from considering spatial sampling design and species' reproductive biology. Biological Conservation 187: 182-191. | Link |
| Hobson EA, DeDeo S. 2015. Social feedback and the emergence of rank in animal society. PLOS Computational Biology. | Link |
| Hobson EA, John DJ, Mcintosh TL, Avery ML, Wright TF. 2015. The effect of social context and social scale on the perception of relationships in monk parakeets. Current Zoology 61(1): 55-69. | Link |
| Hobson EA, John DJ, Mcintosh TL, Avery ML, Wright TF. 2015. The effect of social context and social scale on the perception of relationships in monk parakeets. Current Zoology 61: 55–69. | Link |
| Hoeksema JD, Bruna EM. 2015. Context-dependent outcomes in mutualisms. In: Brontein J (ed.), Mutualism, Oxford University Press. | |
| Holzman R, China V, Yaniv S, Zilka M. 2015. Hydrodynamic Constraints of Suction Feeding in Low Reynolds Numbers, and the Critical Period of Larval Fishes. Integrative and Comparative Biology 55(1): 48-61. | Link |
| Houle D, Meyer K. 2015. Estimating sampling error of evolutionary statistics based on genetic covariance matrices using maximum likelihood. Journal of Evolutionary Biology 28(8): 1542-1549. | Link |
| Hughes JS, Cobbold CA, Haynes K, Dwyer G. 2015. Effects of forest spatial structure on insect outbreaks: Insights from a host-parasitoid model. The American Naturalist 185(5): E130-E152. | Link |
| Ilany A, Booms AS, Holekamp KE. 2015. Structural constraints on long-term social network dynamics in a wild mammal. Ecology Letters 18: 687-695. | |
| Ilany A, Booms AS, Holekamp KE. 2015. Topological effects of network structure on long-term social network dynamics in a wild mammal. Ecology Letters 18(7): 687-695. | Link |
| Jiang et al. 2015. Defining the next generation modeling of coastal ecotone dynamics in response to global change. Ecological Modelling 326: 168-176. | Link |
| Jiang J, Moore JAM, Priyadarshi A, Classen AT. 2015. Resource mediated plant-mycorrhizal interactions confers coexistence of plants. | |
| Jiang Y, Qin H, Yang L. 2015. Using network clustering to predict copy number variations associated with health disparities. PeerJ 3: e677. | Link |
| Joshi HR, Lenhart S, Hota S, Agusto F. 2015. Optimal control of an SIR model with changing behavior through an education campaign. Electronic Journal of Differential Equations 2015(50): 1-14. | Link |
| Kanarek AR, Webb CT, Barfield M, Holt RD. 2015. Overcoming Allee effects through evolutionary, genetic, and demographic rescue. Journal of Biological Dynamics 9(1): 15-33. | Link |
| Kawano SM, Blob RW. 2015. Mixed chains of safety factors in the limb bones of salamanders: Implications for differential limb function in the evolution of terrestrial locomotion. Integrative and Comparative Biology 55: E94-E94. | |
| Kershenbaum A, Freeberg TM, Gammon DE. 2015. Estimating vocal repertoire size is like collecting coupons: A theoretical framework with heterogeneity in signal abundance. Journal of Theoretical Biology 373(2015): 1-11. | Link |
| Kershenbaum A, Garland EC. 2015. Quantifying similarity in animal vocal sequences: Which metric performs best?. Methods in Ecology and Evolution. | Link |
| Kingsolver JG, Heckman N, Zhang J, Carter PA, Knies JL, Stinchcombe J. 2015. Genetic Variation, Simplicity, and Evolutionary Constraints for Function-Valued Traits. The American Naturalist 166: E166-E181. | Link |
| Klinkenberg D, Koets A. 2015. The long subclinical phase of Mycobacterium avium ssp. paratuberculosis infections explained without adaptive immunity. Special Issue of Veterinary Research 46:63. | Link |
| Koets A, Eda S, Sreevatsan S. 2015. The within host dynamics of Mycobacterium avium ssp. paratuberculosis infection in cattle: Where time and place matter. Special Issue of Veterinary Research 46:61. | Link |
| Koets AP, Grohn YT. 2015. Within- and between-host mathematical modeling of Mycobacterium avium subspecies paratuberculosis (MAP) infections as a tool to study the dynamics of host-pathogen interactions in bovine paratuberculosis. Special Issue of Veterinary Research 46:60. | Link |
| Koykka C, Wild G. 2015. The evolution of group dispersal with leaders and followers. Journal of Theoretical Biology. | Link |
| Kramer SC, Bansal S. 2015. Assessing the use of antiviral treatment to control influenza. Epidemiology and Infection 143(8): 1621. | Link |
| Krishna NA, Pennington HM, Coppola CD, Eisenberg MC, Schugart RC. 2015. Connecting local and global sensitivities in a mathematical model for wound healing. Bulletin of Mathematical Biology 77(12):2294-2324. | Link |
| Krivan V, Priyadarshi A. 2015. L-shaped prey isocline in the Gause predator-prey experiments with a prey refuge. Journal of Theoretical Biology 370(2015): 21-26. | Link |
| Kulkarni K, Visweswaran R, Zhao X, Tolkacheva EG. 2015. Characterizing Spatial Dynamics of Bifurcation to Alternans in Isolated Whole Rabbit Hearts Based on Alternate Pacing. BioMed Research International 2015: 170768. | Link |
| Landscape Genomic WG. 2015. A perspective on the pitfalls of experimental design in landscape genomic studies. | |
| Langlais M. 2015. Remarks on the number of persistent states to a fragmented predator-prey model system. Ecological Complexity 21: 246-259. | Link |
| Lanzas C, Chen S. 2015. Complex System Modeling for Veterinary Epidemiology. Preventive Veterinary Medicine 118(2-3): 207-214. | Link |
| Laricchia KM, McCleary TS, Hoban SM, Borkowski D, Romero-Severson J. 2015. Chloroplast haplotypes suggest preglacial differentiation and separate postglacial migration paths for the threatened North American forest tree Juglans cinerea L. Tree Genetics and Genomes 11(2). | Link |
| Layton AT, Edwards A. 2015. Introduction to mathematical modeling of blood flow control in the kidney. AWM proceedings for NIMBioS WS for Women in Mathematical Biology. | |
| Leander R, Lenhart S, Protopopescu V. 2015. Controlling synchrony in a network of Kuramoto oscillators with time-varying coupling. Physica D-Nonlinear Phenomena 301: 36-47. | Link |
| Leander R, Lenhart S, Protopopescu V. 2015. Optimal control of continuous systems with impulse controls. Optimal Control Applications & Methods 36(4): 535-549. | Link |
| Levi T, Keesing K, Oggenfuss K, Ostfeld RS. 2015. Accelerated phenology of blacklegged ticks under climate warming. Philosophical Transactions of the Royal Society B: Biological Sciences 370(1665): 20130556. | Link |
| Leviyang S, Ganusov V. 2015. Broad CTL Response in early HIV infection drives multiple concurrent CTL escapes. PLoS Computational Biology 11(10): e1004492. | Link |
| Levy B, Collincs C, Lenhart S, Stiver W. 2015. Evaluating wild hog preferences and control strategies in Great Smoky Mountains National Park. Mathematical Biosciences and Engineering. | |
| Levy B, Collins C, Lenhart S, Madden M, Corn J, Salinas RA, Stiver W. 2015. Modeling feral hogs in Great Smoky Mountains National Park. Natural Resource Modeling. | |
| Levy et al. 2015. A metapopulation model for feral hogs in Great Smoky Mountains National Park. Natural Resource Modeling 29(1): 71-97. | Link |
| Li Y, Gaillard JR, McLaughlin T, Sorensen TIA, Periwal V. 2015. Macro fat and micro fat: Insulin sensitivity and gender dependent response of adipose tissue to isocaloric diet change. Adipocyte 4(4): 256-263. | Link |
| Loeb et al. 2015. A plan for the North American Bat Monitoring Program (NABat). General Technical Report GTR-SRS-208, USFS Southern Research Station, Asheville, SC. | Link |
| Louzoun Y, Mitchell R, Behar H, Schukken Y. 2015. Two state model for a constant disease hazard in paratuberculosis (and other bovine diseases). Special Issue of Veterinary Research 46:67. | Link |
| Maikai BV, Umoh JU, Maikai VA. 2015. Insight into malaria transmission and control in endemic areas. International Society for Disease Surveillance 7(1): e198. | Link |
| Maroulas V, Nebenfuehr A. 2015. Tracking rapid intracellular movements: A Bayesian random set approach. Annals of Applied Statistics 9(2): 926-949. | Link |
| Martcheva et al. 2015. An immuno-epidemiological model for Johne’s disease in cattle. Special Issue of Veterinary Research 46:69. | Link |
| Martin RA, McGee MD, Langerhans RB. 2015. Predicting ecological and phenotypic differentiation in the wild: A case of piscivorous fish in a fishless environment. Biological Journal fo the Linnean Society 114(3): 588-607. | Link |
| Martinez MV, Lenhart S, White KAJ. 2015. Optimal control of integrodifference equations in a pest-pathogen system. Discrete and Continuous Dynamical Systems - Series B 20(6): 1759-1783. | Link |
| Mcinroe BM, Astley HC, Kawano SM, Blob RW, Goldman DL. 2015. Biological and robotic modeling of the evolution of legged locomotion on land. Integrative and Comparative Biology 55: E123-E123. | |
| Meik JM, Streicher JW, Lawing AM, Flores-Villela O, Fujita MK. 2015. Limitations of climatic data for inferring species boundaries: Insights from speckled rattlesnakes. PLOS One 10(6): e0131435. | Link |
| Meyer EL, Matzke NJ, Williams SJ. 2015. Remote sensing of intertidal habitats predicts West Indian topsnail population expansion but reveals scale-dependent bias. Journal of Coastal Conservation 19(2): 107-118. | Link |
| Miller L. 2015. NIMBioS research collaboration workshop for women in mathematical biology. AWM Newsletter 45(5): 5-7. | Link |
| Mitchell et al. 2015. Differences in intermittent and continuous fecal shedding patterns between natural and experimental Mycobacterium avium subspecies paratuberculosis infections in cattle. Special Issue of Veterinary Research 46:66. | Link |
| Mitrou N, Scully CG, Braam B, Chon KH, Cupples WA. 2015. Laser speckle contrast imaging reveals large-scale synchronization of cortical autoregulation dynamics influenced by nitric oxide. American Journal of Physiology Renal Physiology 308(7): F661-F670. | Link |
| Moore JAM, Jiang J, Post WM, Classen AT. 2015. Decomposition by ectomycorrhizal fungi alters soil carbon storage in a simulation model. Ecosphere 6(3): article 29. | |
| Munther D, Luo Y, Wu J, Magpantay FM, and Srinivasan P. 2015. A mathematical model for pathogen cross-contamination dynamics during produce wash. Food Microbiol 51: 101-7. | Link |
| Noecker C, Schaefer K, Zaccheo K, Yang YD, Day J, Ganusov VV. 2015. Simple mathematical models do not accurately predict early SIV dynamics. Viruses 7(3): 1189-1217. | Link |
| O’Regan SM, Lillie JW, Drake JM. 2015. Leading indicators of mosquito-borne disease elimination. Theoretical Ecology. | Link |
| O'Meara BC, Graham KL, Pellis SM, Burghardt GM. 2015. Evolutionary models for the retention of adult-adult play in primates: The roles of diet and other factors associated with resource acquisition. Adaptive Behaviour 23: 381-391. | Link |
| O'Regan SM, Vinson JE, Park A. 2015. Interspecific contact and competition may affect the strength and direction of disease-diversity relationships for directly transmitted microparasites. American Naturalist. | Link |
| Oremland M, Laubenbacher R. 2015. Optimal harvesting for a predator-prey agent-based model using difference equations. Bulletin of Mathematical Biology. | Link |
| Palagi E. 2015. Humans, other animals, and the biology of morality. In Crane JK (ed) Beastly Morality, Columbia University Press. | |
| Parham PE et al. 2015. Climate, environmental and socio-economic change: Weighing up the balance in vector-borne disease transmission. Philosophical Transactions of the Royal Society B: Biological Sciences 370 (1665). | Link |
| Paudel S, Timilsina YP, Lewis J, Ingersoll T, Jnawali SR. 2015. Population Status and habitat occupancy of endangered River dolphins in the Karnali River system of Nepal during low water season. Marine Mammal Science 31(2): 707. | |
| Pauley LR, Earl JE, Semlitsch RD. 2015. Ecological effects and human use of commercial mosquito insecticides in aquatic communities. Journal of Herpetology 49(1): 28-35. | Link |
| Peace A. 2015. Effects of light, nutrients, and food chain length on trophic efficiencies in simple stoichiometric aquatic food chain models. Ecological Modelling 312: 125-135. | Link |
| Pellis SM, Burghardt GM, Palagi E, Mangel M. 2015. Modeling play: Distinguishing between origins and current functions. Adaptive Behaviour 23: 331-339. | Link |
| Pinter-Wollman N. 2015. Editorial: An introduction to the special column on animal social networks. Current Zoology 61(1): 42-44. | Link |
| Pinter-Wollman N. 2015. Persistent variation in spatial behavior affects the structure and function of interaction networks. Current Zoology 61(1): 98-106. | Link |
| Pope et al. 2015. Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity. eLife 2015: 4:e06416. | Link |
| Rao AR, Cecchi GA, Kaplan E. 2015. Editorial: Towards an integrated approach to measurement, analysis and modeling of cortical networks. Frontiers in Neural Circuits 9: 61. | Link |
| Reddy A, Liu Y, Munoz-Zanzi C, Convertino M. 2015. Eco-epidemiological scaling for early warning models of infectious diseases. PNAS. | |
| Remien CH. 2015. Modeling the dynamics of stable isotope tissue-diet enrichment. Journal of Theoretical Biology 367: 14-20. | Link |
| Reynolds HT, Ingersoll TE, Barton HA. 2015. Modeling the environmental growth of Pseudogymnoascus destructans and its impact on the white-nose syndrome epidemic. Journal of Wildlife Diseases 51(2): 318. | Link |
| Robins et al. 2015. Agent-based model for Johne's disease dynamics in a dairy herd. Special Issue of Veterinary Research 46:68. | Link |
| Rodhouse et al. 2015. Establishing a conservation baseline with dynamic distribution models for bats facing imminent decline. Diversity and Distributions 21: 1401-1413. | Link |
| Ross C, Hooper P, Borgerhoff Mulder M. 2015. Data on the frequency of non-reproductive adults in a cross-cultural sample of small-scale human societies. bioRxiv. | Link |
| Ryan D, Cantrell RS. 2015. Avoidance behavior in intraguild predation communities: A cross-diffusion model. Discrete and Continuous Dynamical Systems 35(4): 1641-1663. | |
| Saldana et al. 2015. Risk factors associated with Trypanosoma cruzi exposure in domestic dogs from a rural community in Panama. Memórias do Instituto Oswaldo Cruz, Rio de Janeiro 110(7): 936-944. | Link |
| Salinas et al. 2015. An individual-based model for feral hogs in Great Smoky Mountains National Park. Natural Resource Modeling 28 (1): 18-36. | Link |
| Schank JC. 2015. The evolution and function of play. Adaptive Behavior 23: 329-330. | Link |
| Schneider et al. 2015. Leptospirosis in Rio Grande do Sul, Brazil: An ecosystem approach in the animal-human interface. PLOS Neglected Tropical Diseases 9(11): e0004095. | Link |
| Schukken et al. 2015. Longitudinal data collection of Mycobacterium avium subspecies Paratuberculosis infections in dairy herds: The value of precise field data. Special Issue of Veterinary Research 46:65. | Link |
| Sgouralis I, Layton AT. 2015. Mathematical modeling of renal hemodynamics in physiology and pathophysiology. Mathematical Biosciences 264: 8-20. | Link |
| Sgouralis I, Layton AT. 2015. Modeling blood flow and oxygenation in a diabetic rat kidney. AWM proceedings for NIMBioS WS for Women in Mathematical Biology. | |
| Showa S, Nyabadza F, Hove-Musekwa SD, Magombedze G. 2015. Exploring the benefits of antibody immune response in HIV-1 infection using a discrete model. Mathematical Medicine and Biology. | Link |
| Smith JE, Estrada JR, Richards HR, Dawes SE, Mitsos K, Holekamp KE. 2015. Collective movements, leadership and consensus costs at reunions in spotted hyaenas. Animal Behaviour 105: 187-200. | |
| Smuts B, Bauer E, Ward C. 2015. Rollovers during play: Complementary perspectives. Behavioural Processes 116: 50-52. | Link |
| Solis-Lemus C, Knowles LL, Ane C. 2015. Bayesian species delimitation combining multiple genes and traits in a unified framework. Evolution 69(2): 492-507. | Link |
| Spencer M. 2015. Size change, shape change, and the growth space of a community. Journal of Theoretical Biology 369: 23-41. | Link |
| Springborn et al. 2015. Integrating invasion and disease in the risk assessment of live bird trade. Diversity and Distributions 21(1): 101-110. | Link |
| Springborn M, Chowell G, MacLachlan M, Fenichel EP. 2015. Accounting for behavioral responses during a flu epidemic using home television viewing. BioMed Central 15:21. | Link |
| Sturner K, Lucci K. 2015. The difference that data make: Examining bird migration data to build scientific skill. American Biology Teacher (Univ. of California Press) 77(1): 56-61. | Link |
| Teboh-Ewungkem M, Prosper O, Gurski K, Manore C, Peace A, Feng Z. 2015. Intermittent preventive treatment (IPT) and the spread of drug resistant malaria. The IMA Volumes in Mathematics and Its Applications. | |
| Teufel AI, Masel J, and Liberles DA. 2015. What fraction of duplicates observed in recently sequenced genomes is segregating and destined to fail to fix?. Genome Biology and Evolution 7(8): 2258-2264. | Link |
| Tranmer M, Marcum CS, Morton B, Croft D, de Kort S. 2015. Using the Relational Event Model (REM) to investigate the temporal dynamics of animal social networks. Animal Behaviour 101: 99-105. | Link |
| Tsiligaridis J. 2015. MSA and Clustering with Dot Matrices, Entropy and Genetic Algorithms. In Big Data : Algorithms, Analytics, and Applications, CRC Press, Taylor & Francis Group. | |
| Van Wassenbergh S, Day SW, Hernandez LP, Higham TE, Skorczewski T. 2015. Suction power output and the inertial cost of rotating the neurocranium to generate suction in fish. Journal of Theoretical Biology 372(2015): 159-167. | Link |
| Wainwright PC, McGee MD, Longo SJ, Hernandez JP. 2015. Origins, innovations, and diversification of suction feeding in vertebrates. Integrative and Comparative Biology 55(1): 134-145. | Link |
| Weitz et al. 2015. A multitrophic model to quantify the effects of marine viruses on microbial food webs and ecosystem processes. The ISME Journal 9(6): 1352-1364. | Link |
| Whitehead H, James R. 2015. Generalized affiliation indices extract affiliations from social network data. Methods in Ecology and Evolution 6(7): 836-844. | Link |
| Wommack KE, Nasko DJ, Chopyk J, Sakowski EG. 2015. Counts and sequences, observations that continue to change our understanding of viruses in nature. Journal of Microbiology 53(3): 181-192. | Link |
| Yamamichi M, Meunier CL, Peace A, Prater C, Rua MA. 2015. Rapid evolution of a consumer stoichiometric trait destabilizes consumer-producer dynamics. Oikos 124(7): 960-969. | Link |
| Zefferman M, Mathew S. 2015. An evolutionary theory of large-scale human warfare: Group-structured cultural selection. Evolutionary Anthropology 24(2): 50-61. | Link |
| Zefferman MR, Mathew S. 2015. A theory of human warfare: Group-structured cultural selection. Evolutionary Anthropology 24(2): 50-56. | Link |
| Zenni RD, Hoban SM. 2015. Loci under selection during multiple range expansions of an invasive plant are mostly population specific, but patterns are associated with climate. Molecular Ecology. | Link |
| Zhu S, Degnan JH, Eldon B. 2015. Hybrid-Lambda: Simulation of multiple merger and Kingman gene genealogies in species networks and species trees. Systematic Biology 6: 292. | |
| Zia A, Hammond Wagner C. 2015. Mainstreaming early warning systems in development and planning processes: Multilevel implementation of Sendai Framework in Indus and Sahel. International Journal of Disaster Risk Science 6 (2):189-199. | Link |
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| Publications 2014 | Online |
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| Aguilar-Bonavides C, Cruz-Cano R, Lanzas C. 2014. Prediction and rule extraction of major histocompatibility complex class II epitopes by logic minimization. Proceedings of the 14th International Conference on Bioinformatics and Computational Biology 167-173. | |
| Aguilar-Bonavides C, Sanchez-Arias R, Lanzas C. 2014. Accurate prediction of major histocompatibility complex class II epitopes by sparse representation via l(1)-minimization. BioData Mining 7:23. | Link |
| Allen EJ. 2014. Derivation and computation of discrete-delay and continuous-delay SDEs in mathematical biology. Mathematical Biosciences and Engineering 11(3): 403. | Link |
| Almeida-Filho et al. 2014. An investigation of Hebbian phase sequences as assembly graphs. Front Neural Circuits 8:34. | Link |
| Alonso LM, Proekt A, Schwartz TH, Pryor KO, Cecchi GA, Magnasco MO. 2014. Dynamical criticality during induction of anesthesia in human ECoG recordings. Frontiers in Neural Circuits. | Link |
| Ankrah et al. 2014. Phage infection of an environmentally relevant marine bacterium alters host metabolism and lysate composition. The ISME Journal 8: 1089-1100. | Link |
| Bao L et al. 2014. Computational and statistical analyses of insertional polymorphic endogenous retroviruses in a non-model organism. Computation 2(4): 221-245. | Link |
| Beaulieu JM, O'Meara BC. 2014. Hidden Markov models for studying the evolution of binary morphological character. In: Garamszegi LZ (Ed.), Modern Phylogenetic Comparative Methods and Their Application in Evolutionary Biology - Concepts and Practice. | |
| Beaulieu JM, O'Meara BC. 2014. Modeling stabilising selection: The attraction of Ornstein-Uhlenbeck models. In: Garamszegi LZ (Ed.), Modern Phylogenetic Comparative Methods and Their Application in Evolutionary Biology - Concepts and Practice. | |
| Bell TM, Strand AE, Sotka EE. 2014. The adaptive cline at LDH (lactate dehydrogenase) in killifish Fundulus heteroclitus remains stationary after 40 years of warming estuaries. Journal of Heredity 105(4): 566-571. | Link |
| Berec L, Maxin D. 2014. Why have parasites promoting mating success been observed so rarely?. Journal of Theoretical Biology 342: 47-61. | Link |
| Bewick S, Chisholm RA, Akcay E, Godsoe W. 2014. A stochastic biodiversity model with overlapping niche structure. Theoretical Ecology 8(1): 81-109. | Link |
| Bewick S, Stuble KL, Lessard JP, Dunn RR, Adler FR, Sanders NJ. 2014. Predicting future coexistence in a North American ant community. Ecology and Evolution 4(10): 1804-1819. | Link |
| Bishop PR, Huck SQ, Ownley BH, Richards JK, Skolits GJ. 2014. Impacts of an interdisciplinary research center on participant publication and collaboration patterns: A case study of the National Institute for Mathematical and Biological Synthesis. Research Evaluation. | Link |
| Blayneh KW, Mohammed-Awel J. 2014. Insecticide-resistant mosquitoes and malaria control. Mathematical Biosciences 252: 14-26. | Link |
| Blumberg S, Funk S, Pulliam JRC. 2014. Detecting differential transmissibilities that affect the size of self-limited outbreaks. PLoS Pathogens 10(10): e1004452. | Link |
| Bodine EN, Lenhart S, Gross L. 2014. Mathematics for the Life Sciences. Princeton, NJ: Princeton Press. | Link |
| Boete C, Agusto FB, Reeves RG. 2014. Impact of mating behaviour on the success of malaria control through a single inundative release of transgenic mosquitoes. Journal of Theoretical Biology 347: 33-43. | Link |
| Bonito et al. 2014. Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants. Molecular Ecology 23(13): 3356-3370. | Link |
| Buchan A, LeCleir GR, Gulvik CA, Gonzalez JM. 2014. Master recyclers: Features and functions of bacteria associated with phytoplankton blooms. Nature Reviews Microbiology 12: 686-698. | Link |
| Camacho ET, Melara LA, Villalobos MC, Wirkus S. 2014. Optimal control in the treatment of Retinitis Pigmentosa. Bulletin of Mathematical Biology 76(2). | Link |
| Caughlin et al. 2014. Loss of animal seed dispersal increases extinction risk in a tropical tree species due to pervasive negative density dependence across life stages. Proceedings of the Royal Society B: Biological Sciences 282(1798): 20142095. | Link |
| Chary M, Kaplan E. 2014. Synchrony can destabilize reward-sensitive networks. Frontiers in Neural Circuits. | Link |
| Chen S, White BJ, Sanderson MW, Amrine DE, Ilany A, Lanzas C. 2014. Highly dynamic animal contact network and implications on disease transmission. Scientific Reports 4: 4472. | Link |
| Chen-Charpentier B, Leite MCA. 2014. A model for coupling fire and insect outbreak in forests. Ecological Modeling 286: 26-36. | Link |
| Cornwell et al. 2014. Functional distinctiveness of major plant lineages. Journal of Ecology 102(2): 345-356. | Link |
| DeGiorgio M, Degnan JH. 2014. Robustness to divergence time underestimation when inferring species trees from estimated gene trees. Systematic Biology 63(1): 66-82. | Link |
| Demartsev et al. 2014. Male hyraxes increase song complexity and duration in the presence of alert individuals. Behavioral Ecology 25(6): 1451-1458. | Link |
| Dhurandhar EJ et al. 2014. Predicting adult weight change in the real world: A systematic review and meta-analysis accounting for compensatory changes in energy intake or expenditure. International Journal of Obesity. | Link |
| Dhurandhar et al. 2014. Energy balance measurement: When something is not better than nothing. International Journal of Obesity. | Link |
| Ding W, Hendon RC, Cathey B, Lancaster E, Germick R. 2014. Discrete Time Optimal Control Applied to Pest Control Problems. Involve, a Journal of Mathematics 7(4): 479. | |
| Donahue K. 2014. Why ontogeny matters during adaptation: Developmental niche construction and pleiotorpy across the life cycle in Arabidopsis thaliana. Evolution 68(1): 32-47. | Link |
| Dorazio RM, Connor EF. 2014. Estimating abundances of interacting species using morphological traits, foraging guilds, and habitat. PLoS ONE 9(4): e94323. | Link |
| Duncan SI, Lenhart S, Sturner KK. 2014. Activities for students: Measuring Biodiversity with probability. Mathematics Teacher 107(7): 547-552. | |
| Earl JE, Castello PO, Cohagen KE, Semlitsch RD. 2014. Effects of subsidy quality on reciprocal subsidies: How leaf litter species changes frog biomass export. Oecologia 175(1): 209-218. | Link |
| Earl JE, Gray MJ. 2014. Introduction of ranavirus to isolated wood frog populations could cause local extinction. Ecohealth 11(4): 581-592. | Link |
| Earl JE, Zollner PA. 2014. Effects of animal movement strategies and costs on the distribution of active subsidies across simple landscapes. Ecological Modelling 283(10): 45-52. | Link |
| Fedosov DA, Gompper G. 2014. White blood cell margination in microcirculation. Soft Matter 10: 2961-2970. | Link |
| Ferrer-i-Cancho R. 2014. Optimization models of natural communication. Physics and Society, arXiv:1412.2486. | Link |
| Ganusov VV, Auerbach J. 2014. Mathematical modeling reveals kinetics of lymphocyte recirculation in the whole organism. PLoS Computational Biology 10(5): e1003586. | Link |
| Gaoue OG, Lemes MR, Ticktin T, Sinsin B, Eyog-Matig O. 2014. Non-timber forest product harvest does not affect the genetic diversity of a tropical tree despite negative effects on population fitness. Biotropica 46(6): 756-762. | Link |
| Gavin et al. 2014. Climate refugia: Joint inference from fossil records, species distribution models and phylogeography. New Phytologist 204(1): 37-54. | Link |
| Gavin et al. 2014. Climate refugia: Joint inference from fossil records, species distribution models and phylogeography. New Phytologist 204(1): 37–54. | Link |
| Gavrilets S, Fortunato L. 2014. A solution to the collective action problem in between-group conflict with within-group inequality. Nature Communications 5: 3526. | Link |
| Gavrilets S. 2014. Is sexual conflict an "engine of speciation"?. Cold Spring Harbor Perspectives in Biology 6(12). | Link |
| Gavrilets S. 2014. Models of speciation: Where are we now?. Journal of Heredity 105: 743-755. | Link |
| Gervini D, Carter PA. 2014. Warped functional analysis of variance. Biometrics 70(3): 526-535. | Link |
| Ghosh-Dastidar U, Fiorini E, Lora SM. 2014. Connectance, robustness, and the Hudson River food web. BAASANA International conference Proceedings. | |
| Gibbs DC, Donohue K. 2014. Gene duplication and the environmental regulation of physiology and development. Ecology and Evolution 4(11): 2202-2216. | Link |
| Godsoe W. 2014. Inferring the similarity of species distributions using Species' Distribution Models. Ecography 37(2): 130-136. | Link |
| Gonzalez-Forero M. 2014. An evolutionary resolution of manipulation conflict. Evolution 68(7): 2038-2051. | Link |
| Gorecki P, Eulenstein O. 2014. DrML: Probabilistic modeling of gene duplications. Journal of Computational Biology 21(1): 89-98. | Link |
| Gorecki P, Eulenstein O. 2014. Maximizing deep coalescence cost. IEEE-ACM Transactions on Computational Biology and Bioinformatics 11(1): 231-242. | Link |
| Gotteland C, McFerris B, Gilot-Fromont E, Zhao X, Lelu M. 2014. Agricultural landscape and spatial distribution of Toxoplasma gondii in rural environment: An agent-based model. International Journal of Health Geographics 13: 45. | Link |
| Grear DA, Kaneene JB, Averill JJ, Webb CT. 2014. Local cattle movements in response to ongoing bovine tuberculosis zonation and regulations in Michigan, USA. Preventive Veterinary Medicine 114(3-4): 201-212. | Link |
| Gurarie D, King CH. 2014. Population biology of schistosoma mating, aggregation, and transmission breakpoints: More reliable model analysis for the end-game in communities at risk. PLoS ONE 9(12): e115875. | Link |
| Herman JJ, Spencer HG, Donohue K, Sultan SE. 2014. How stable 'should' epigenetic modifications be? Insights from adaptive plasticity and bet hedging. Evolution 68(3): 632-643. | Link |
| Hill et al. 2014. Surveillance of feral swine for Trichinella spp. and Toxoplasma gondii in the USA and host-related factors associated with infection. Veterinary Parasitology 205(3-4): 653-665. | Link |
| Hoban et al. 2014. Comparative evaluation of potential indicators and temporal sampling protocols for monitoring genetic erosion. Evolutionary Applications 7(9): 984-998. | Link |
| Hoban S, Schlarbaum S. 2014. Optimal sampling of seeds from plant populations for ex-situ conservation of genetic biodiversity, considering realistic population structure. Biological Conservation 177: 90-99. | Link |
| Hoban S. 2014. An overview of the utility of population simulation software in molecular ecology. Molecular Ecology 23(10): 2383-2401. | Link |
| Hoban SM, McCleary TS, Schlarbaum SE, Romero-Severson J. 2014. Spatial genetic structure in 21 populations of butternut, a temperate forest tree (Juglans cinerea L.), is correlated to spatial arrangement, habitat, and land-use history. Forest Ecology and Management 314: 50-58. | Link |
| Hobson EA, Avery ML, Wright TF. 2014. The socioecology of Monk Parakeets: Insights into parrot social complexity. AUK 131(4): 756-775. | Link |
| Hrynkiv V, Koshkin S. 2014. Invasion waves in the presence of a mutualist. Mathematical Methods in the Applied Sciences 37(15): 2185–2197. | Link |
| Iacona GD. 2014. The economic costs and ecological benefits of protected areas. University of Tennessee, Knoxville. | |
| Jhwueng DC, Huzurbazar S, O'Meara BC, Liu L. 2014. Investigating the performance of AIC in selecting phylogenetic models. Statistical Applications in Genetics and Molecular Biology 13(4): 459-475. | Link |
| Jhwueng DC, Maroulas V. 2014. Phylogenetic Ornstein-Uhlenbeck regression curves. Statistics and Probability Letters 89: 110-117. | Link |
| Jiang et al. 2014. Bistability of mangrove forests and competition with freshwater plants. Agricultural and Forest Meteorology 213: 283-290. | Link |
| Jiang J, DeAngelis DL, Anderson GH, Smith TJ. 2014. Analysis and simulation of propagule dispersal and salinity intrusion from storm surge on the movement of a marsh-mangrove ecotone in south Florida. Estruaries and Coasts 37(1): 24-35. | |
| Jiang J, DeAngelis DL, Zhang B, Cohen JE. 2014. Population age and initial density in a patchy environment affect the occurrence of abrupt transitions in a birth-and-death model of Taylor's law. Ecological Modelling 289: 59-65. | Link |
| Jover LF, Effler TC, Buchan A, Wilhelm SW, Weitz JS. 2014. The elemental composition of virus particles: Implications for marine biogeochemical cycles. Nature Reviews Microbiology 12(7): 519-528. | Link |
| Kamangira B, Nyamugure P, Magombedze G. 2014. A theoretical mathematical assessment of the effectiveness of coartemether in the treatment of Plasmodium falciparum malaria infection. Mathematical Biosciences 256: 28-41. | Link |
| Karpinets TV, Park BH, Syed MH, Klotz MG, Uberbacher EC. 2014. Metabolic environments and genomic features associated with pathogenic and mutualistic interactions between bacteria and plants. Molecular Plant-Microbe Interactions 27(7): 664-677. | Link |
| Kershenbaum A, Bowles A, Freeburg T, J Dezhe, Lameira A, Bohn K. 2014. Animal vocal sequences: Not the Markov chains we thought they were. Proceedings of the Royal Society B: Biological Sciences 281(1792): 20141370. | Link |
| Kershenbaum A. 2014. Entropy rate as a measure of animal vocal complexity. Bioacoustics 23(3): 195-208. | Link |
| Kershenbaum et al. 2014. Acoustic sequences in non-human animals: A tutorial review and prospectus. Biological Reviews 91(1): 13-52. | Link |
| Kershenbaum et al. 2014. Exploration of preterm birth rates using the Public Health Exposome Database and computational analysis methods. International Journal of Environmental Research and Public Health 11(12): 12346-12366. | Link |
| Kershenbaum et al. 2014. Landscape influences on dispersal behaviour: A theoretical model and empirical test using the fire salamander, Salamandra infraimmaculata. Oecologia 175(2): 509-520. | Link |
| Kroetz K, Sanchirico JN, Armsworth PR, Banzhaf HS. 2014. Benefits of the ballot box for species conservation. Ecology Letters 17(3). | Link |
| Lawing AM, Matzke NJ. 2014. Conservation paleobiology needs phylogenetic methods. Ecography 37(11): 1109-1122. | Link |
| Leander R, Allen EJ, Garbett SP, Tyson DR, Quaranta V. 2014. Derivation and experimental comparison of cell-division probability densities. Journal of Theoretical Biology 359: 129. | Link |
| Leslie AB, Beaulieu JM, Crane PR, Donoghue MJ. 2014. Cone size is related to branching architecture in conifers. New Phytologist 203(4): 1119-1127. | Link |
| Li XJ, Peng ZL, Lei H, Dao M, Karniadakis, GE. 2014. Probing red blood cell mechanics, rheology and dynamics with a two-component multiscale model. Philosophical Transactions A 372: 20130389. | Link |
| Ma et al. 2014. A phylogenetic model for understanding the effect of gene duplication on cancer progression. Nucleic Acids Research 42: 2870-2878. | Link |
| Mack KML, Bever JD. 2014. Coexistence and relative abundance in plant communities are determined by feedbacks when the scale of feedback and dispersal is local. Journal of Ecology 102(5): 1195-1201. | Link |
| Magombedze G, Eda S, Ganusov VV. 2014. Competition for antigen between Th1 and Th2 responses determines the timing of the immune response switch during Mycobaterium avium subspecies paratuberulosis infection in ruminants. PLoS Computational Biology 10(1): e1003414. | Link |
| Matzke NJ, Shih PM, Kerfeld CA. 2014. Bayesian analysis of congruence of core genes in Prochlorococcus and Synechococcus and implications on horizontal gene transfer. PLoS One 9(1): e85103. | Link |
| Matzke NJ. 2014. Model selection in historical biogeography reveals that founder-event speciation is a crucial process in island clades. Systematic Biology 63(6): 951-970. | Link |
| McAlarnen L, Smith K, Brownstein JS, Jerde C. 2014. Internet and free press are associated with reduced lags in global outbreak reporting. PLoS Currents Outbreaks. | Link |
| McBridea et al. 2014. Spectral and complexity analysis of scalp EEG characteristics for mild cognitive impairment and early Alzheimer's disease. Computer Methods and Programs in Biomedicine 114(2): 153-163. | Link |
| Mesterton-Gibbons M, Heap SM. 2014. Variation between self- and mutual assessment in animal contests. The American Naturalist 183(2): 199-213. | Link |
| Mesterton-Gibbons M, Karabiyik T, Sherratt TN. 2014. The iterated Hawk-Dove game revisited: The effect of ownership uncertainty on Bourgeois as a pure convention. Dynamic Games and Application 4(4): 407-431. | Link |
| Mesterton-Gibbons M, Sherratt TN. 2014. Bourgeois versus anti-Bourgeois: A model of infinite regress. Animal Behaviour 89: 171-183. | Link |
| Miller et al. 2014. Simulating free-roaming cat population management options in open demographic environments. PLoS ONE 9(11). | Link |
| Ngonghala CN, Del Valle SY, Zhao R, Mohammed-Awel J. 2014. Quantifying the impact of decay in bed-net efficacy on malaria transmission. Journal of Theoretical Biology 363(21): 247-261. | Link |
| Ngonghala CN, Teboh-Ewungkem MI, Ngwa GA. 2014. Persistent oscillations and backward bifurcation in a malaria model with varying human and mosquito populations: Implications for control. Journal of Mathematical Biology 70(7): 1581-1622. | Link |
| Ngonghala et al. 2014. Poverty, disease, and the ecology of complex systems. PLoS Biology 12(4): e1001827. | Link |
| Ngwa et al. 2014. On a reproductive stage-structured model for the population dynamics of the malaria vector. Bulletin of Mathematical Biology 76(10): 2476-2516. | Link |
| Numfor E, Bhattacharya S, Lenhart S, Martcheva M. 2014. Optimal control in coupled within-host and between-host models. Mathematical Modelling of Natural Phenomena 9(4): 171-203. | |
| Oremland M, Laubenbacher R. 2014. Using difference equations to find optimal tax structures on the SugarScape. Journal of Economic Interaction and Coordination 9(2): 233-253. | |
| Palagi E, Norscia I, Spada G. 2014. Relaxed open mouth as a playful signal in wild ring-tailed lemurs. American Journal of Primatology 76(11): 1074-1083. | Link |
| Patel et al. 2014. Experimental observation of extreme multistability in an electronic system of two coupled Rossler oscillators. BioPortfolio 89(2): 022918. | Link |
| Rabier CE, Ta T, Ane C. 2014. Detecting and locating whole genome duplications on a phylogeny: A probabilistic approach. Molecular Biology and Evolution 31(3): 750-762. | Link |
| Remien CH, Sussman NL, Adler FR. 2014. Mathematical modelling of chronic acetaminophen metabolism and liver injury. Mathematical Medicine and Biology 31(3): 302-317. | Link |
| Remien et al. 2014. Deconvolution of isotope signals from bundles of multiple hairs. Oecologia 175(3): 781-789. | Link |
| Roesti M, Gavrilets S, Hendry AP, Salzburger W, Berner D. 2014. The genomic signature of parallel adaptation from shared genetic variation. Molecular Ecology 23(16): 3944-3956. | Link |
| Shimada M, Sueur C. 2014. The importance of social play networks for wild chimpanzees at Mahale Mountains National Park, Tanzania. American Journal of Primatology 76: 1025. | Link |
| Showa SP, Nyabadza F, Hove-Musekwa SD, Magombedze G. 2014. A comparison of elasticities of viral levels to specific immune response mechanisms in human immunodeficiency virus infection. BMC Research Notes 7:737. | Link |
| Smuts B. 2014. Social behavior among companion dogs with an emphasis on play. In J Kaminsky, S Marshall-Pescini (eds.), The Social Dog, Elsevier Inc., pp. 105-130. | |
| Stevenson RD, Klemow KM, Gross LJ. 2014. Harnessing bits and bytes to transform ecology education. Frontiers in Ecology and the Environment 12: 306–307. | Link |
| Sussman NL, Remien CH, Kanwal F. 2014. The end of Hepatitis C. Clinical Gastroenterology and Hepatology 12(4): 533-536. | Link |
| Swedlund A, Sattenspiel L, Warren A, Gumerman G. 2014. Modelling archaeology: 20 years after Artificial Anasazi. In Wurzer G, Kowarik K, Reschreiter H (eds) Agent-based Modelling and Archaeology, Springer, pp. 37-50. | |
| Teboh-Ewungkem MI, Mohammed-Awel J, Baliraine FN, Duke-Sylvester SM. 2014. The effect of intermittent preventive treatment on anti-malarial drug resistance spread in areas with population movement. Malaria Journal 13: 428. | Link |
| Teufel AI, Zhao J, O'Reilly M, Liu L, Liberles DA. 2014. On mechanistic modeling of gene content evolution: Birth-death models and mechanisms of gene birth and gene retention. Computation 2(3): 112-130. | Link |
| Thomas et al. 2014. Dynamic model predicting overweight, obesity, and extreme obesity prevalence trends. Obesity 22(2): 590-597. | Link |
| Tsao et al. 2014. Sources of bovine tuberculosis in the United States. Infection, Genetics and Evolution 28: 137-143. | Link |
| Turchin P, Currie T, Turner EAL, Gavrilets S. 2014. Reply to Thomas: Diffusion of military technologies is a plausible explanation for the evolution of social complexity 1500 BCE-AD 1500. Proceedings of the National Academy of Sciences 111(4): E415. | Link |
| Velazquez J, Garrahan JP, Eichhorn MP. 2014. Spatial complementarity and the coexistence of species. PLoS ONE 9(12): e114979. | Link |
| Wallace DI, Southworth BS, Shi X, Chipman JW, Githeko AK. 2014. A comparison of five malaria transmission models: Benchmark tests and implications for disease control. Malaria Journal 13: 268. | Link |
| Woods et al. 2014. Directional collective cell migration emerges as a property of cell interactions. PloS ONE 9(9): e104969. | Link |
| Yanik B, Lenhart S, Sturner K. 2014. Get involved in outreach! AWM Newsletter 44(2): 21-22. | Link |
| Yee SH, Carriger JF, Bradley P, Fisher WS, Dyson B. 2014. Developing scientific information to support decisions for sustainable coral reef ecosystem services. Ecological Economics. | Link |
| Yee SH, Dittmar JA, Oliver LM. 2014. Comparison of methods for quantifying reef ecosystem services: A case study mapping services for St. Croix, USVI. Ecosystem Services 8: 1-15. | Link |
| Zanne et al. 2014. Three keys to the radiation of angiosperms into freezing environments. Nature 506(7486). | Link |
| Zefferman MR. 2014. Direct reciprocity under uncertainty does not explain one-shot cooperation, but demonstrates the benefits of a norm psychology. Evolution and Human Behavior 35(5): 358-367. | Link |
| Zhao R, Mohammed-Awel J. 2014. A mathematical model studying mosquito-stage transmission-blocking vaccines. Mathematical Biosciences and Engineering 11(5): 1229-1245. | Link |
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| Publications 2013 | Online |
|---|---|
| Agusto et al. 2013. The impact of bed-net use on malaria prevalence. Journal of Theoretical Biology 320(7): 58-65. | Link |
| Agusto F, Lenhart S. 2013. Optimal control of the spread of malaria superinfectivity. Journal of Biological Systems 21(4): 1340002. | Link |
| Agusto FB, Gumel AB. 2013. Qualitative dynamics of lowly- and highly-pathogenic avian influenza strains. Mathematical Biosciences 243(2): 147-162. | Link |
| Allman ES, Degnan JH, Rhodes JA. 2013. Species tree inference by the STAR method and its generalizations. Journal of Computational Biology 20(1): 50-61. | Link |
| Archer E et al. 2013. Validation of a novel protocol for calculating estimated energy requirements and average daily physical activity ratio for the US population: 2005-2006. | Link |
| Barton BH, Moran E. 2013. Measuring diversity on the Supreme Court with biodiversity statistics. Journal of Empirical Legal Studies 10(1): 1-34. | Link |
| Beaulieu JM, O'Meara BC, Donoghue MJ. 2013. Identifying hidden rate changes in the evolution of a binary morphological character: The evolution of plant habit in campanulid angiosperms. Systems Biology 62(5): 725-737. | Link |
| Beaulieu JM, Tank DC, Donoghue MJ. 2013. A Southern Hemisphere origin for campanulid angiosperms, with traces of the break-up of Gondwana. BMC Evolutionary Biology 13: 80. | Link |
| Bechette et al. 2013. Mathematical modeling of bacteria-virus interactions in Lake Michigan incorporating phosphorus content. Journal of Great Lakes Research 39(4): 646-654. | Link |
| Berec L, Maxin D. 2013. Fatal or harmless: Extreme bistability induced by sterilizing, sexually transmitted pathogens. Bulletin of Mathematical Biology 75(2): 258-273. | Link |
| Berg CL, Chow JS, Mcgee MD, Wainwright PC. 2013. Divergent feeding kinematics in two Amazonian cichlids. Integrative and Comparative Biology, 53(S1): E246. | |
| Blankenship T, Tisdale C, Yang Y. Submitted 2013. Statistical tracking of fast movements of organelles. Involve, A Journal of Mathematics. | |
| Bolnick DI, Otto SP. 2013. The magnitude of local adaptation under genotype-dependent dispersal. Ecology and Evolution 3(14): 4722-4735. | Link |
| Borstein SR, Mcgee MD, Wainwright PC. 2013. Mouthbrooding does not constrain craniofacial diversity in Lake Tanganyika cichlids. Integrative and Comparative Biology 53(1): E251. | |
| Bossu CM, Beaulieu JM, Ceas PA, Near TJ. 2013. Explicit tests of palaeodrainage connections of southeastern North America and the historical biogeography of Orangethroat Darters (Percidae: Etheostoma: Ceasia). Molecular Ecology 22(21): 5397-5417. | Link |
| Bravo R, Axelrod D. 2013. A calibrated agent-based computer model of stochastic cell dynamics in normal human colon crypts useful for in silico experiments. Theoretical Biology and Medical Modelling 10: 66. | Link |
| Buhnerkempe et al. 2013. A national-scale picture of US cattle movements obtained from Interstate Certificate of Veterinary Inspection data. Preventive Veterinary Medicine 112(3-4): 318-329. | Link |
| Carstens BC, Satler JD, Jordan, D. 2013. The carnivorous plant described as Sarracenia alata contains two cryptic species. Biological Journal of the Linnean Society 109(4): 737-746. | Link |
| Chaffee DW, Griffin H, Gilman RT. 2013. Sexual imprinting: What strategies should we expect to see in nature?. Evolution 67(12): 3588-3599. | Link |
| Chen S, Sanderson M, Lanzas C. 2013. Investigating effects of between- and within-host variability on Escherichia coli 0157 shedding pattern and transmission. Preventive Veterinary Medicine 109(1-2): 47-57. | Link |
| Chen S, Sanderson MW, White BJ, Amrine DE, Lanzas C. 2013. Temporal-spatial heterogeneity in animal-environment contact: Implications for the exposure and transmission of pathogens. Scientific Reports 3: 3112. | Link |
| Cho E. 2013. Algorithm for finding maximal frequent sets. International Journal of Pure and Applied Mathematics 83(2). | Link |
| Chow JS, Berg CL, Hymes M, Mcgee MD, Wainwright PC. 2013. Convergent feeding kinematics in elongate cichlids. Integrative and Comparative Biology 53(S1). | |
| Chu Y, Li G, Guo H. 2013. QM/MM MD and free energy simulations of the methylation reactions catalyzed by protein arginine methyltransferase PRMT3. Canadian Journal of Chemistry - Revue Canadienne de Chimie 91(7): 605-612. | Link |
| Collar DC, Mehta RS, Holzman R, Wainwright PC. 2013. The morphological and kinematic basis of suction feeding performance evolution. Integrative and Comparative Biology 53(S1): E37. | |
| Collins C, Shen J, Wise SM. 2013. An efficient, energy stable scheme for the Cahn-Hilliard-Brinkman system. Communications in Computational Physics 13(4): 929-957. | Link |
| Connor EF, Collins MD, Simberloff D. 2013. The checkered history of checkerboard distributions. Ecology 94(11): 2403-2414. | Link |
| Cordoni G, Palagi E. 2013. Smiling and primate play faces: Origins and functions. Human Evolution 28: 1-12. | |
| Cressman R, Krivan V. 2013. Two-patch population models with adaptive dispersal: The effects of varying dispersal speeds. Journal of Mathematical Biology 67(2): 329-358. | Link |
| Dall'Olio S. 2013. PhD dissertation. Universita di Firenze, Firenze, Italy. | |
| de Waal FBM, Gavrilets S. 2013. Monogamy with a purpose. Proceedings of the National Academy of Sciences 110(38): 15167-15168. | Link |
| DeAngelis D. 2013. The case for ratio dependence in trophic ecology. Trends in Ecology & Evolution 28(5): 259-260. | Link |
| DeAngelis DL. 2013. Intraspecific trait variation and its effects on food chains. Mathematical Biosciences 244(2): 91-97. | Link |
| Degnan JH. 2013. Anomalous unrooted gene trees. Systematic Biology 62(4): 574-590. | Link |
| Earl JE, Semlitsch RD. 2013. Carryover effects in amphibians: Are characteristics of the larval habitat needed to predict juvenile survival?. Ecological Applications 23(6): 1429-1442. | Link |
| Earl JE, Semlitsch RD. 2013. Spatial subsidies, trophic state, and community structure: Examining the effects of leaf litter input on ponds. Ecosystems 16(4): 639-651. | Link |
| Federico P, Gross LJ, Lenhart S, Ryan D. 2013. Optimal control in individual-based models: Implications from aggregated methods. The American Naturalist 181(1): 64-77. | Link |
| Feng ZL, Velasco-Hernandez J, Tapia-Santos B. 2013. A mathematical model for coupling within-host and between-host dynamics in an environmentally-driven infectious disease. Mathematical Biosciences 241(1): 49-55. | Link |
| Funk S, Nishiura H, Heesterbeek H, Edmunds WJ, Checchi F. 2013. Identifying transmission cycles at the human-animal interface: The role of animal reservoirs in maintaining gambiense human African trypanosomiasis. PLoS Computational Biology 9(1): e1002855. | Link |
| Ganusov VV, De Boer RJ. 2013. A mechanistic model for bromodeoxyuridine dilution naturally explains labelling data of self-renewing T cell populations. Journal of the Royal Society Interface 10(78): 20120617. | Link |
| Gaoue OG, Horvitz CC, Ticktin T, Steiner UK, Tuljapurkar S. 2013. Defoliation and bark harvesting affect life-history traits of a tropical tree. Journal of Ecology 101(6): 1563-1571. | Link |
| Gaydos et al. 2013. Visualizing genetic constraints. Annals of Applied Statistics 7(2): 860-882. | Link |
| Gil et al. Submitted 2013. Dengue dynamics in the 2009 outbreak in Oran, north of Argentina: Space-time analysis. | |
| Godsoe W, Larson MA, Glennon KL, Segraves KA. 2013. Polyploidization in Heuchera cylindrica (Saxifragaceae) did not result in a shift in climatic requirements. American Journal of Botany 100(3): 496-508. | Link |
| Gonzalez-Forero M, Gavrilets S. 2013. Evolution of manipulated behavior. The American Naturalist 182(4): 439-451. | Link |
| Gorecki P, Eulenstein O, Tiuryn J. 2013. Unrooted tree reconciliation: A unified approach. IEEE-ACM Transactions on Computational Biology and Bioinformatics 10(2): 522-536. | Link |
| Gross L. 2013. Selective ignorance and multiple scales in biology: Deciding on criteria for model utility. Biological Theory 8(1): 74-79. | Link |
| Gross L. 2013. Use of computer systems and models. In: Levin SA (ed.), Encyclopedia of Biodiversity, Second Edition, Vol. 2, pp. 213-220. Waltham, MA: Academic Press. | |
| Grunloh NR. 2013. Senior Thesis: A stochastic dynamic model of the behavioral ecology of play. University of California, Santa Cruz, CA. | |
| Hay et al. 2013. Global mapping of infectious disease. Philosophical Transactions of The Royal Society B: Biological Sciences 368(1614): 20120250. | Link |
| Haynes KJ, Bjornstad ON, Allstadt AJ, Liebhold AM. 2013. Geographical variation in the spatial synchrony of a forest-defoliating insect: Isolation of environmental and spatial drivers. roceedings of the Royal Society B: Biological Sciences 280(1753): 20122373. | Link |
| Hoban et al. 2013. Conservation genetic resources for effective species survival (ConGRESS): Bridging the divide between conservation research and practice. Journal for Nature Conservation 21(6): 433-437. | Link |
| Hoban et al. 2013. High variance in reproductive success generates a false signature of a genetic bottleneck in populations of constant size: A simulation study. BMC Bioinformatics 14: 1309. | |
| Hughes JS. 2013. Dissertation: Patterns and processes in forest insects population dynamics. University of Toronto. | |
| Ilany A, Barocas A, Kam M, Ilany T, Geffen E. 2013. The energy cost of singing in wild rock hyrax males: Evidence for an index signal. Animal Behaviour 85(5): 995-1001. | Link |
| Ilany A, Barocas A, Koren L, Kam M, Geffen E. 2013. Structural balance in the social networks of a wild mammal. Animal Behaviour 85(6): 1397-1405. | Link |
| Ingersoll TE, Sewall BJ, Amelon S. 2013. Improved analysis of long-term monitoring data demonstrates marked regional declines of bat populations in the eastern United States. PLoS ONE 8(6): e65907. | Link |
| Jhwueng DC. 2013. Assessing the Goodness of Fit of phylogenetic comparative methods: A meta-analysis and simulation study. PLoS ONE 8(6): e67001. | Link |
| Jiang J, DeAngelis D. 2013. Strong species-environment feedback shapes plant community assembly along environmental gradients. Ecology and Evolution 3(12): 4119-4128. | Link |
| Kakade V, Zhao X, Tolkacheva EG. 2013. Using dominant eigenvalue analysis to predict formation of alternans in the heart. Physical Review E 88(5): 052716. | Link |
| Kanarek AR, Webb CT, Barfield M, Holt RD. 2013. Allee effects, aggregation, and invasion success. Theoretical Ecology 6(2): 153-164. | Link |
| Kershenbaum A, Roch MA. 2013. An image processing based paradigm for the extraction of tonal sounds in cetacean communications. The Journal of the Acoustical Society of America 134(6): 4435-4445. | Link |
| Kershenbaum A, Sayigh LS, Janik VM. 2013. The encoding of individual identity in dolphin signature whistles: How much information is needed?. PLoS ONE 8(10): e77671. | Link |
| Knudsen GR, Dixon RD, Amelon SK. 2013. Potential spread of White-nose Syndrome of bats to the northwest: Epidemiological considerations. Northwest Science 87(4): 292-306. | Link |
| Kreft et al. 2013. Mighty small: Observing and modeling individual microbes becomes big science. Proceedings of the National Academy of Sciences 110(45): 18027-18028. | Link |
| Krivan V. 2013. Behavioral refuges and predator-prey coexistence. Journal of Theoretical Biology 339: 112-121. | Link |
| Lameira et al. 2013. Predator guild does not influence orangutan alarm call rates and combinations. Behavioral Ecology and Sociobiology 67(3): 519-528. | Link |
| Lapiedra O, Sol D, Carranza S, Beaulieu JM. 2013. Behavioural changes and the adaptive diversification of pigeons and doves. roceedings of the Royal Society B: Biological Sciences 280(1755): 20122893. | |
| Laubenbacher R, Hinkelmann F, Oremland M. 2013. Agent-based models and optimal control in biology: A discrete approach. In: R. Robeva, T. Hodge (ed.), Mathematical Concepts and Methods in Modern Biology (edition 1), pp. 143-178. San Diego, CA: Elsevier. | Link |
| Lelu M, Langlais M, Poulle ML, Gilot-Fromont E, Gandon S. 2013. When should a trophically and vertically transmitted parasite manipulate its intermediate host? The case of Toxoplasma gondii. roceedings of the Royal Society B: Biological Sciences 280(1765): 20131143. | Link |
| Lendemer JC, Hodkinson BP. 2013. A radical shift in the taxonomy of Lepraria sl: Molecular and morphological studies shed new light on the evolution of asexuality and lichen growth form diversification. Mycologia 105(4): 994-1018. | Link |
| Lenhart S, Bodine E, Zhong P, Joshi H. 2013. Illustrating optimal control applications with discrete and continuous features. In: Melnik R, Kotsireas IS (eds.), Advances in Applied Mathematics, Modeling, and Computational Science, Fields Institute Communications 66: 209-238. | Link |
| Lennox GD, Armsworth PR. 2013. The ability of landowners and their cooperatives to leverage payments greater than opportunity costs from conservation contracts. Conservation Biology 27(3): 625-634. | Link |
| Leslie AB, Beaulieu JM, Crane PR, Donoghue MJ. 2013. Explaining the distribution of breeding and dispersal syndromes in conifers. roceedings of the Royal Society B: Biological Sciences 280(1770): 20131812. | Link |
| Liberles DA, Teufel AI, Liu L, Stadler T. 2013. On the need for mechanistic models in computational genomics. Genome Biology and Evolution 5: 2008-2018. | Link |
| Lindstrom et al. 2013. A Bayesian approach for modeling cattle movements in the United States: Scaling up a partially observed network. PLoS ONE 8(1): e53432. | Link |
| Lu Z, Schukken YH, Smith RL, Grohn YT. 2013. Using vaccination to prevent the invasion of Mycobacterium avium subsp paratuberculosis in dairy herds: A stochastic simulation study. Preventive Veterinary Medicine 110(3-4): 335-345. | Link |
| Lu Z, Schukken YH, Smith RL, Mitchell RM, Grohn YT. 2013. Impact of imperfect Mycobacterium avium subsp paratuberculosis vaccines in dairy herds: A mathematical modeling approach. Preventive Veterinary Medicine 108(2-3): 148-158. | Link |
| Magombedze G, Dowdy D, Mulder N. 2013. Latent tuberculosis: Models, computational efforts and the pathogen's regulatory mechanisms during dormancy. Frontiers in Bioengineering and Biotechnology, ISSN: 2296 4185. | Link |
| Magombedze G, Mulder N. 2013. Understanding TB latency using computational and dynamic modelling procedures. Infection, Genetics and Evolution 13: 267-283. | Link |
| Magombedze G, Ngonghala CN, Lanzas C. 2013. Evalution of the "Iceberg Phenomenon" in Johne's Disease through mathematical modelling. PLoS ONE 8(10): e76636. | Link |
| Magombedze G, Reddy PBJ, Eda S, Ganusov VV. 2013. Cellular and population plasticity of helper CD4+ T cell responses. Frontiers in Physiology 4, ISSN: 1664 042X. | Link |
| Mancini G, Ferrari PF, Palagi E. 2013. In play we trust. Rapid facial mimicry predicts the duration of playful interactions in Geladas. PLoS ONE 8(6): e66481. | Link |
| Mancini G, Ferrari PF, Palagi E. 2013. Rapid facial mimicry in geladas. Scientific Reports 3: 1527. | |
| Maroulas V, Xiong J. 2013. Large deviations for optimal filtering with fractional Brownian motion. Stochastic Processes and Their Applications 123(6): 2340-2352. | Link |
| Martin RA, Garnett SC. 2013. Relatedness and resource diversity interact to influence the intensity of competition. Biological Journal of the Linnean Society 110(3): 689-695. | Link |
| Martin RA, Langerhans RB. 2013. Piscivorous fish in a fishless environment: Dietary and phenotypic differentiation of bigmouth sleepers in Bahamas blue holes. Integrative and Comparative Biology 53(S1): E138. | Link |
| Martin RA, Riesch R, Heinen-Kay JL, Langerhans RB. 2013. Evolution of male coloration during a post-pleistocene radiation of bahama's mosquitofish (Gambusia hubbsi). Evolution 68(2): 397-411. | Link |
| Massaro et al. 2013. Modeling for cost analysis of Johne's disease control based on EVELISA testing. Journal of Biological Systems 21(4): 1340010. | Link |
| Matzke NJ. 2013. Probabilistic historical biogeography: New models for founder-event speciation, imperfect detection, and fossils allow improved accuracy and model-testing. Frontiers of Biogeography 5(4): 242-248. | Link |
| McBride J, Zhao XP, Munro N, Smith C, Jicha G, Jiang Y. 2013. Resting EEG discrimination of early stage Alzheimer's disease from normal aging using inter-channel coherence network graphs. Annals of Biomedical Engineering 41(6): 1233-1242. | Link |
| Mesterton-Gibbons M, Sherratt TN. 2013. Signalling Victory to Ensure Dominance: A Continuous Model. In Cardaliaguet P and Cressman R (eds.), Advances in Dynamic Games, Part I 12: 25-38. | Link |
| Meyer K, Houle D. 2013. Sampling based approximation of confidence intervals for functions of genetic covariance matrices. Proceedings from the 20th Conference of the Association for the Advancement of Animal Breeding and Genetics 20: 523-526. | Link |
| Mieszkowska N, Milligan G, Burrows MT, Freckleton R, Spencer M. 2013. Dynamic species distribution models from categorical survey data. Journal of Animal Ecology 82(6): 1215-1226. | Link |
| Moran EV, Bewick S, Cobbold C. 2013. Effects of plant genotype and insect dispersal rate on the population dynamics of a forest pest. Ecology 94(12): 2792-2802. | Link |
| Moran EV, Kubiske ME. 2013. Can elevated CO2 and ozone shift the genetic composition of aspen (Populus tremuloides) stands?. New Phytologist 198(2): 466-475. | Link |
| Morin BR, Fenichel EP, Castillo-Chavez C. 2013. SIR dynamics with economically driven contact rates. Natural Resource Modeling 26(4): 505-525. | Link |
| Mushayabasa S, Bhunu CP, Magombedze G, Stewart AGR. 2013. On the role of screening and educational campaigns on controlling HCV in correctional institutions. Journal of Biological Systems 21(1): 1350007. | Link |
| Noon K, Welsh CJE, Ingersoll T. 2013. Analysis of changes in wintering bird numbers using the Knoxville Christmas Bird Count as a case study. Migrant 84: 1-23. | |
| Oremland M, Laubenbacher R. 2013. Optimization of agent-based models: Scaling methods and heuristic algorithms. Journal of Artificial Societies and Social Simulation 17(2): 6. | Link |
| Palagi E. 2013. Playing alone and with others - A lesson from animals. In: Coplan RJ, Bowker J (eds.), A Handbook of Solitude: Psychological Perspectives on Social Isolation, Social Withdrawal, and Being Alone. | Link |
| Panovska-Griffiths J, Page KM, Briscoe J. 2013. A gene regulatory motif that generates oscillatory or multiway switch outputs. Journal of the Royal Society Interface 10(79): 20120826. | Link |
| Parker et al. 2013. Do invasive species perform better in their new ranges. Ecology 94: 985-994. | Link |
| Peterman WE, Rittenhouse TAG, Earl JE, Semlitsch RD. 2013. Demographic network and multi-season occupancy modeling of Rana sylvatica reveal spatial and temporal patterns of population connectivity and persistence. Landscape Ecology 28(8): 1601-1613. | Link |
| Pienaar J, Ilany A, Geffen E, Yom-Tov Y. 2013. Macroevolution of life-history traits in passerine birds: Adaptation and phylogenetic inertia. Ecology Letters 16(5): 571-576. | Link |
| Plucinski MM, Ngonghala C, Getz WM, Bonds MH. 2013. Clusters of poverty and disease emerge from feedbacks on an epidemiological network. Journal of The Royal Society Interface 10(80): 20120656. | Link |
| Portacci K, Miller R, Riggs P, Buhnerkempe M, Abrahamsen L. 2013. Assessment of paper interstate certificates of veterinary inspection used to support disease tracing in cattle. Journal of the American Veterinary Medical Assoication 243(4): 555-560. | Link |
| Pringle EG, Akcay E, Raab TK, Dirzo R, Gordon DM. 2013. Water stress strengthens mutualism among ants, trees, and scale insects. PLoS Biology 11(11): e1001705. | Link |
| Qin H, Driks A. 2013. Contrasting evolutionary patterns of spore coat proteins in two Bacillus species groups are linked to a difference in cellular structure. BMC Evolutionary Biology 13: 261. | Link |
| Rannala B, Yang Z. 2013. Improved reversible jump algorithms for Bayesian species delimitation. Genetics 194(1): 245-253. | Link |
| Rice WR, Friberg U, Gavrilets S. 2013. Homosexuality via canalized sexual development: A testing protocol for a new epigenetic model. Bioessays 35(9): 764-770. | Link |
| Riesch R, Martin RA, Lerp H, Plath M, Wronski T. 2013. Size and sex matter: Reproductive biology and determinants of offspring survival in Gazella marica. Biological Journal of the Linnean Society 110(1): 116-127. | Link |
| Rodder et al. 2013. Evaluating the significance of paleophylogeographic species distribution models in reconstructing Quaternary range-shifts of Nearctic chelonians. PLoS ONE 8(10): e72855. | Link |
| Ryan D, Daley BJ, Wong K, Zhao X. 2013. Prediction of ICU in-hospital mortality using a deep Boltzmann machine and dropout neural net. Proceedings of the Biomedical Sciences and Engineering Conference (BSEC). | Link |
| Ryan D, Papamichail D. 2013. Rational design of orthogonal libraries of protein coding genes. ACS Synthetic Biology 2(4): 237-244. | Link |
| Shah P, Fitzpatrick BM, Fordyce JA. 2013. A parametric method for assessing diversification-rate variation in phylogenetic trees. Evolution 67(2): 368-377. | Link |
| Sherratt T, Mesterton-Gibbons M. 2013. Models of group or multi-party contests. In: Hardy ICW, Briffa M (eds.), Animal Contests, Cambridge University Press. | Link |
| Shimada M. 2013. Dynamics of the temporal structures of playing clusters and cliques among wild chimpanzees in Mahale Mountains National Park. Primates 54(3): 245-257. | Link |
| Shimada M. 2013. Wild chimpanzees can perform social grooming and social play behaviors simultaneously. Primates 54(4): 315-317. | Link |
| Signoriello A. 2013. Undergraduate Honors Thesis: Stochastic models for an antibiotic-resistant infection. Ursinus College. | |
| Steffen et al. 2013. Development and validation of a risk score predicting substantial weight gain over 5 years in middle-aged European men and women. PLoS ONE 8(7): e67429. | Link |
| Sturner K, Golden B, Lenhart SL. 2013. Modeling the forest. Science Scope 37(1): 70-79. | |
| Sullivan AM, Zhao X, Suzuki Y, Ochiai E, Crutcher S, Gilchrist MA. 2013. Evidence for finely-regulated asynchronous growth of Toxoplasma gondii cysts based on data-driven model selection. PLoS Computational Biology 9(11): e1003283. | Link |
| Sullivan AM. 2013. Dissertation: Multiscale modeling of Toxoplasma gondii. University of Tennessee, Knoxville. | Link |
| Teboh-Ewungkem MI, Ngwa GA, Ngonghala CN. 2013. Models and proposals for malaria: A review. Mathematical Population Studies: An International Journal of Mathematical Demography 20(2): 57-81. | Link |
| Thibert-Plante X, Gavrilets S. 2013. Evolution of mate choice and the so-called magic traits in ecological speciation. Ecology Letters 16(8): 1004-1013. | Link |
| Turchin P, Currie TE, Turner EAL, Gavrilets S. 2013. War, space, and the evolution of Old World complex societies. Proceedings of the National Academy of Sciences 110(41): 16384-16389. | Link |
| Turner M, Lenhart S, Rosenthal B, Zhao X. 2013. Modeling effective transmission pathways and control of the world's most successful parasite. Theoretical Population Biology 86: 50-61. | Link |
| Urban MC, Burger R, Bolnick DI. 2013. Asymmetric selection and the evolution of extraordinary defences. Nature Communications 4: 2085. | Link |
| van der Wal A, Tecon R, Kreft JU, Mooij WM, Leveau JHJ. 2013. Explaining bacterial dispersion on leaf surfaces with an individual-based model (PHYLLOSIM). PLoS ONE 8(10): e75633. | Link |
| Van Dyken JD, Muller MJI, Mack KML, Desai MM. 2013. Spatial population expansion promotes the evolution of cooperation in an experimental prisoner's dilemma. Current Biology 23(10): 919-923. | Link |
| Velagala J. 2013. Undergraduate honors thesis: Markov chain based VRE model. Ursinus College. | |
| Visweswaran R, McIntyre SD, Ramkrishnan K, Zhao XP, Tolkacheva EG. 2013. Spatiotemporal evolution and prediction of [Ca2+](i) and APD alternans in isolated rabbit hearts. Journal of Cardiovascular Electrophysiology 24(11): 1287-1295. | Link |
| Wang et al. 2013. Oscillatory behavior of two nonlinear microbial models of soil carbon decomposition. Biogeosciences Discussions 10: 19661-19700. | Link |
| Wang Y, Gautam R, Pinedo PJ, Allen LJS, Ivanek R. 2013. A stochastic model for transmission, extinction and outbreak of Escherichia coli O157:H7 in cattle as affected by ambient temperature and cleaning practices. Journal of Mathematical Biology, 69(2): 501-532. | Link |
| Wehe A, Burleigh JG, Eulenstein O. 2013. Efficient algorithms for knowledge-enhanced supertree and supermatrix phylogenetic problems. IEEE-ACM Transactions on Computational Biology and Bioinformatics 10(6): 1432-1441. | Link |
| Willis et al. 2013. What can be learnt about disease progression in breast cancer dormancy from relapse data?. PLoS ONE 8(5): e62320. | Link |
| Xia H, Asif I, Zhao X. 2013. Cloud-ECG for real time ECG monitoring and analysis. Computer Methods and Programs in Biomedicine 110(3): 253-259. | Link |
| Zaccarelli N, Bolnick DI, Mancinelli G. 2013. RInSp: An R package for the analysis of individual specialization in resource use. Methods in Ecology and Evolution 4(11): 1018-1023. | Link |
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| Publications 2012 | Online |
|---|---|
| Agusto FB, Bewick S, Parshad RD. 2012. Mosquito management in the face of natural selection. Mathematical Biosciences 239(1): 154-168. | Link |
| Agusto FB, Marcus N, Okosun KO. 2012. Application of optimal control to the epidemiology of malaria. Electronic Journal of Differential Equations, vol. 2012(2012, no. 81): 1-22. | Link |
| Akcay E, Van Cleve J. 2012. Behavioral responses in structured populations pave the way to group optimality. The American Naturalist 179(2): 257-269. | |
| Akcay E. 2012. Incentives in the family II: Behavioral dynamics and the evolution of non-costly signaling. Journal of Theoretical Biology 294(7): 9-18. | Link |
| Allen et al. 2012. Mathematical modeling of viral zoonoses in wildlife. Natural Resource Modeling 25(1): 5-51. | Link |
| Allen LJ, Bokil VA. 2012. Stochastic models for competing species with a shared pathogen. Mathematical Biosciences and Engineering 9(3): 461-485. | Link |
| Arditi R, Ginzburg LR. 2012. How Species Interact: Altering the Standard View on Trophic Ecology. Oxford University Press, ISBN: 978-0-19-991383-1. | Link |
| Balaskas et al. 2012. Gene regulatory logic for reading the Sonic Hedgehog signaling gradient in the vertebrate neural tube. Cell 148(1-2): 273-284. | Link |
| Bani-Yaghoub M, Gautam R, Shuai Z, van den Driessche P, Ivanek R. 2012. Reproduction numbers for infections with free-living pathogens growing in the environment. Journal of Biological Dynamics 6(2): 923-940. | Link |
| Baracos et al. 2012. Advances in the science and application of body composition measurement. Journal of Parenteral & Enteral Nutrition 36(1): 96-107. | Link |
| Beaulieu JM, Jhwueng DC, Boettiger C, O'Meara BC. 2012. Modeling stabilizing selection: Expanding the Ornstein-Uhlenbeck model of adaptive evolution. Evolution 66(8): 2369-2383. | Link |
| Beckage B, Gross L, Platt W, Godsoe W, Simberloff D. 2012. Individual variation and weak neutrality as determinants of forest diversity. Frontiers of Biogeography 3(4): 145-155. | |
| Birand A, Vose A, Gavrilets S. 2012. Patterns of species ranges, speciation, and extinction. The American Naturalist 179(1). | Link |
| Bishop P. 2012. Dissertation: Impacts of an interdisciplinary research center on participant publication and collaboration activities. University of Tennessee. | Link |
| Bode M, Armsworth PR, Fox HE, Bode L. 2012. Surrogates for reef fish connectivity when designing marine protected area networks. Marine Ecology Progress Series 466: 155-166. | Link |
| Bodine EN, Gross LJ, Lenhart S. 2012. Order of events matter: Comparing discrete models for optimal control of species augmentation. Journal of Biological Dynamics 6(Supplement 2): 31-49. | Link |
| Borchering RK, Liu H, Steinhaus MC, Gardner CL, Kuang Y. 2012. A simple spatiotemporal rabies model for skunk and bat interaction in northeast Texas. Journal of Theoretical Biology 314: 16-22. | Link |
| Cantrell RS, Cosner C, Lou Y, Ryan D. 2012. Evolutionary stability of ideal free dispersal strategies: A nonlocal dispersal model. Canadian Applied Mathematics Quarterly 20(1): 15-38. | |
| Ceddia MG. 2012. Optimal Disease Eradication in Sympatric Metapopulations. Environmental and Resource Economics 52(4): 499-530. | Link |
| Chaudhary R, Burleigh JG, Fernandez-Baca D. 2012. Fast local search for unrooted Robinson-Foulds supertrees. IEEE-ACM Transactions on Computational Biology and Bioinformatics 9(4): 1004-1013. | |
| Choudhary S, Sood S, Donnell RL, Wang HC. 2012. Intervention of human breast cell carcinogenesis chronically induced by 2-amino-1-methyl-6-phenylimidazo[4,5-b]pyridine. Carcinogenesis 33(4): 876-885. | Link |
| Christen JA, Capistran-Ocampo MA, Velasco-Hernandez JX. 2012. Towards uncertainty quantification and inference in the stochastic SIR epidemic model. Mathematical Biosciences 240(2). | |
| Chu Y, Yao J, Guo H. 2012. QM/MM MD and free energy simulations of G9a-like protein (GLP) and its mutants: Understanding the factors that determine the product specificity. PLoS ONE 7(5): e37674. | Link |
| Ciani F, Dall'Olio S, Stanyon R, Palagi E. 2012. Social tolerance and adult play in macaque societies: A comparison with different human cultures. Animal Behaviour 84(6): 1313-1322. | Link |
| Collins C, Lenhart S, Nanda S, Xiong J, Yakovlev K, Yong J. 2012. Optimal control of harvesting in a stochastic metapopulation model. Optimal Control Applications & Methods 33(2): 127-142. | Link |
| Cordoni G, Palagi E. 2012. Fair play and homnest signals in immature chimpanzees. Proceedings Societa Toscana 119: 97-101. | Link |
| Crawley CE, Bishop PR. 2012. Communicating science through music: A case study from mathematics and biology. Quality, Honesty and Beauty in Science and Technology Communications. Public Understanding of Science and Technology 2012. Bucchi M, Trench B (Eds.). Observational Science in Society Publisher 288-290. ISBN: 978-88-904514-9-2. | Link |
| Dall SRX, Bell AM, Bolnick DI, Ratnieks FLW. 2012. An evolutionary ecology of individual differences. Ecology Letters 15(10): 1189-1198. | Link |
| Degnan JH, Rosenberg NA, Stadler T. 2012. A characterization of the set of species trees that produce anomalous ranked gene trees. IEEE-ACM Transactions on Computational Biology and Bioinformatics 9(6). | |
| Dong et al. 2012. A dynamical systems model for improving gestational weight gain behavioral interventions. American Control Conference Published Proceedings from 27-29 June 2012, pp. 4059-4064. | Link |
| Dorazio RM. 2012. Predicting the geographic distribution of a species from presence-only data subject to detection errors. Biometrics 68(4): 1303-1312. | Link |
| Dunn et al. 2012. Indirect effects of parasites in invasions. Functional Ecology 26(6): 1262-1274. | Link |
| Edelaar P, Bolnick DI. 2012. Non-random gene flow: An underappreciated force in evolution and ecology. Trends in Ecology & Evolution 27(12): 659-665. | Link |
| Einarsson B, Birnir B, Bonilla L. 2012. Ordered, disordered and partially synchronized schools of fish. UC Santa Barbara: Center for Complex and Nonlinear Science. | Link |
| Ekloef A, Helmus MR, Moore M, Allesina S. 2012. Relevance of evolutionary history for food web structure. roceedings of the Royal Society B: Biological Sciences 279(1733): 1588-1596. | Link |
| Eldon B, Degnan J. 2012. Multiple merger gene genealogies in two species: Monophyly, paraphyly, and polyphyly for two examples of Lambda coalescents. Theoretical Population Biology 82(2): 117-130. | Link |
| Elser JJ, Kuang Y. 2012. Ecological stoichiometry. In: Hastings A, Gross L (eds.), Sourcebook in Theoretical Ecology, University of California Press. | Link |
| Elser JJ, Loladze I, Peace AL, Kuang Y. 2012. Lotka re-loaded: Modeling trophic interactions under stoichiometric constraints. Ecological Modelling 245: 3-11. | Link |
| Feng Z, Velasco-Hernandez J, Tapia-Santos B, Leite MCA. 2012. A model for coupling within-host and between-host dynamics in an infectious disease. Nonlinear Dynamics 68(3): 401-411. | Link |
| Finotti H, Lenhart S, Phan T. 2012. Optimal control of advective direction in reaction-diffusion population models. Evolution Equations and Control Theory 1(1): 81-107. | Link |
| Fitzpatrick BM. 2012. Estimating ancestry and heterozygosity of hybrids using molecular markers. BMC Evolutionary Biology 12: 131. | Link |
| Gavrilets S. 2012. Human origins and the transition from promiscuity to pair-bonding. Proceedings of the National Academy of Sciences 109(25). | Link |
| Gavrilets S. 2012. On the evolutionary origins of the egalitarian syndrome. Proceedings of the National Academy of Sciences 109(35): 14069-14074. | Link |
| Gilman RT, Fabina NS, Abbott KC, Rafferty NE. 2012. Evolution of plant-pollinator mutualisms in response to climate change. Evolutionary Applications 5(1): 2-16. | Link |
| Gilman RT, Nuismer SL, Jhwueng DC. 2012. Coevolution in multidimensional trait space favours escape from parasites and pathogens. Nature 483(7389): 328-330. | Link |
| Gilot-Fromont et al. 2012. The life cycle of Toxoplasma gondii in the natural environment. In: Olgica Djurkovic Djakovic (ed.), Toxoplasmosis - Recent Advances. ISBN 978-953-51-0746-0. | Link |
| Godsoe W, Harmon LJ. 2012. How do species interactions affect species distribution models?. Ecography 35(9): 811-820. | Link |
| Godsoe W. 2012. Are comparisons of species distribution models biased? Are they biologically meaningful. Ecography 35(9): 769-779. | Link |
| Gong et al. 2012. Evolution of patterns on Conus shells. Proceedings of the National Academy of Sciences 109(5): E234-E241. | Link |
| Gross LJ, Beckage B. 2012. Toward a metabolic scaling theory of crop systems. Proceedings of the National Academy of Sciences 109(39): 15535-15536. | Link |
| Hakansson N. 2012. Dissertation: Network analysis and optimization of animal transports. Linkoping Studies in Science and Technology, Dissertation No. 1434, Linkoping University, Sweden. | Link |
| Hamer SA, Hickling GJ, Sidge JL, Walker ED, Tsao JI. 2012. Synchronous phenology of juvenile Ixodes scapularis, vertebrate host relationships, and associated patterns of Borrelia burgdorferi ribotypes in the midwestern United States. Ticks and Tick-borne Diseases 3(2): 65-74. | Link |
| Heitmann BL et al. 2012. Obesity: Lessons from evolution and the environment. Obesity Reviews 12(10): 910-922. | Link |
| Heymsfield et al. 2012. Energy content of weight loss: Kinetic features during voluntary caloric restriction. Metabolism 61(7): 937-943. | Link |
| Heymsfield SB, Muller MJ, Bosy-Westphal A, Thomas D, Shen W. 2012. Human brain mass: Similar body composition associations as observed across mammals. American Journal of Human Biology 24(4): 479-485. | Link |
| Hodkinson BP, Lendemer JC. 2012. Phylogeny and taxonomy of an enigmatic sterile lichen. Systematic Botany 37(4): 865-844. | Link |
| Hritonenko N, Yatsenko YU. 2012. Bang-bang, impulse, and sustainable harvesting in age-structured populations. Journal of Biological Systems 20(2): 133. | Link |
| Jensen CXJ. 2012. Ratio dependent predator-prey theory: Aged, mellowed, and distilled. Ecological Modelling 246: 103-104. | Link |
| Jiang W, Sullivan AM, Su C, Zhao X. 2012. An agent-based model for the transmission dynamics of Toxoplasma gondii. Journal of Theoretical Biology 293(21): 15-26. | Link |
| Langlais M, Lelu M, Avenet C, Gilot-Fromont E. 2012. A simplified model system for Toxoplasma gondii spread within a heterogeneous environment. Nonlinear Dynamics 68(3): 381-399. | Link |
| Leander R, Lenhart S, Protopopescu V. 2012. Using optimal control theory to identify network structures that foster synchrony. Physica D-Nonlinear Phenomena 241(5): 574-582. | Link |
| Lelu et al. 2012. Quantitative estimation of the viability of Toxoplasma gondii oocysts in soil. Applied and Environmental Microbiology 78(15): 5127-5132. | Link |
| Lennartsson J, Hakansson N, Wennergren U, Jonsson A. 2012. SpecNet: A spatial network algorithm that generates a wide range of specific structures. PLoS ONE 7(8): e42679. | Link |
| Lennartsson J. 2012. Dissertation: Networks and epidemics - impact of network structure on disease transmission. Linkoping Studies in Science and Technology, Dissertation No. 1433, Linkoping University, Sweden. | Link |
| Lennox GD, Dallimer M, Armsworth PR. 2012. Landowners' ability to leverage in negotiations over habitat conservation. Theoretical Ecology 5(1): 115-128. | Link |
| Liancourt P, Choler P, Gross N, Thibert-Plante X, Tielborger K. 2012. How facilitation may interfere with ecological speciation. International Journal of Ecology, vol. 2012 (Article ID: 725487). | Link |
| Liebhold AM, Haynes KJ, Bjornstad ON. 2012. Spatial synchrony of insect outbreaks. In: Barbosa P, Letourneau DK, Agrawal AA (eds.), Insect Outbreaks Revisited, pp. 113-125. NY: Wiley. | Link |
| Lindstrom T, Lewerin SS, Wennergren U. 2012. Influence on disease spread dynamics of herd characteristics in a structured livestock industry. Journal of the Royal Society Interface 9(71): 1287-1294. | Link |
| Lindstrom T, Sisson SA, Hakansson N, Bergman KO, Wennergren U. 2012. A spectral and Bayesian approach for analysis of fluctuations and synchrony in ecological datasets. Methods in Ecology and Evolution 3(6): 1019-1027. | Link |
| Logdberg F, Wennergren U. 2012. Spectral color, synchrony, and extinction risk. Theoretical Ecology 5(4): 545-554. | Link |
| Louzoun Y, Ganusov VV. 2012. Evolution of viral life-cycle in response to cytotoxic T lymphocyte-mediated immunity. Journal of Theoretical Biology 310: 3-13. | Link |
| Marquez EJ, Cabeen R, Woods RP, Houle D. 2012. The measurement of local variation in shape. Evolutionary Biology 39(3): 419-439. | |
| Martinez-Vega et al. 2012. A prospective cohort study to evaluate peridomestic infection as a determinant of dengue transmission: Protocol. BMC Public Health 12: 262. | Link |
| McCandlish DM. 2012. Dissertation: Evolution on arbitrary fitness landscapes when mutation is weak. Duke University. | |
| Mesterton-Gibbons M, Sherratt TN. 2012. Divide and conquer: When and how should competitors share?. Evolutionary Ecology 26(4): 943-954. | Link |
| Momotani E. 2012. Epidemiological situation and control strategies for paratuberculosis in Japan. The Japanese Journal of Veterinary Research 60(Supplement S): S19-29. | Link |
| Momotani et al. 2012. Molecular pathogenesis of bovine paratuberculosis and human inflammatory bowel diseases. Veterinary Immunology and Immunopathology 148(1-2): 55-68. | Link |
| Moran EV, Clark JS. 2012. Between-site differences in the scale of dispersal and gene flow in red oak. PLoS ONE 7(5). | |
| Moran EV, Clark JS. 2012. Causes and consequences of unequal seedling production in forest trees: A case study in red oaks. Ecology 93(5): 1082-1094. | Link |
| Moran EV, Willis J, Clark JS. 2012. Genetic evidence for hybridization in red oaks (quercus sect. lobatae, fagaceae). American Journal of Botany 99(1): 92-100. | Link |
| Ngonghala CN, Ngwa GA, Teboh-Ewungkem MI. 2012. Periodic oscillations and backward bifurcation in a model for the dynamics of malaria transmission. Mathematical Biosciences 240(1): 45-62. | Link |
| Nikitina et al. 2012. Mtb-Specific CD27(low) CD4 T Cells as Markers of Lung Tissue Destruction during Pulmonary Tuberculosis in Humans. PLoS ONE 7(8): e43733. | Link |
| Oufiero CE, Holzman RA, Young FA, Wainwright PC. 2012. New insights from serranid fishes on the role of trade-offs in suction-feeding diversification. The Journal of Experimental Biology 215(pt. 21): 3845-3855. | Link |
| Palagi E, Cordoni G. 2012. The right time to happen: Play developmental divergence in the two pan species. PLoS ONE 7(12): e52767. | |
| Perminov VD. 2012. On the reproduction number and a presentation of results for infectious diseases models. Journal of Life Scienes 6: 754-757. | Link |
| Potochnik A, McGill B. 2012. The limitations of hierarchical organization. Philosophy of Science 79(1): 120-140. | Link |
| Potochnik A. 2012. Modeling social and evolutionary games. Studies in History and Philosophy of Biological and Biomedical Sciences 43(1): 202-208. | Link |
| Qin H, Shapiro A, Yang L (editors). 2012. Emerging infectious disease: A computational multi-agent model. IEEE 2012 ASE International Conference on Biomedical Computing. | |
| Rathore K, Choudhary S, Odoi A, Wang HC. 2012. Green tea catechin intervention of reactive oxygen species-mediated ERK pathway activation and chronically induced breast cell carcinogenesis. Carcinogenesis 33(1): 174-183. | Link |
| Rathore K, Wang HC. 2012. Green tea catechin extract in intervention of chronic breast cell carcinogenesis induced by environmental carcinogens. Molecular Carcinogenesis 51(3): 280-289. | Link |
| Rice WR, Friberg U, Gavrilets S. 2012. Homosexuality as a consequence of epigenetically canalized sexual development. The Quarterly Review of Biology 87(4): 343-368. | Link |
| Rosen et al. 2012. Borrelia burgdorferi not detected in widespread Ixodes scapularis (Acari: Ixodidae) collected from white-tailed deer in Tennessee. Journal of Medical Entomology 49(6): 1473-1480. | Link |
| Schraiber et al. 2012. Constraints on the use of lifespan-shortening Wolbachia to control dengue fever. Journal of Theoretical Biology 297: 33. | Link |
| Simmerman et al. 2012. Exploring similarities among many species distributions. Proceedings of the 1st Conference of the Extreme Science and Engineering Discovery Environment 2012: Bridging from the eXtreme to the campus and beyond, article no. 38. | Link |
| Skyrms B. 2012. Aspects of naturalizing the social contract. In: Aoki M, Binmore K, Deakin S, Gintis H (eds.), Complexity and Institutions: Markets, Norms and Corporations, pp. 124-145. New York: Palgrave Macmillan. | |
| Smith G. 2012. Preferential sexual transmission of pseudorabies virus in feral swine populations may not account for observed seroprevalence in the USA. Preventive Veterinary Medicine 103(2-3): 145-156. | Link |
| Smith K. 2012. Undergraduate Honors Thesis: Modeling the effect of diversity in host plant-herbivore-predator interactions. Ursinus College. | |
| Sorensen TI. 2012. Is obesity a healthy active response to an expected future lack of energy rather than a passive storage of surplus energy?. Obesity Facts 5(3): 431-435. | Link |
| Souza MJ, Cairns T, Yarbrough J, Cox S. 2012. In vitro investigation of a terbinafine impregnated subcutaneous implant for veterinary use. Journal of Drug Delivery 2012(2012): 436710. | Link |
| Spada G. 2012. Gioco sociale e comunicazione multimodale in Lemur catta: Uno studio etologico in natura. Universita di Pisa. | |
| Stadler T, Degnan JH. 2012. A polynomial time algorithm for calculating the probability of a ranked gene tree given a species tree. Algorithms for Molecular Biology 7: 1-9. | Link |
| Stinchcombe JR, Function-valued Traist Working Group, Kirkpatrick M. 2012. Genetics and evolution of function-valued traits: Understanding environmentally responsive phenotypes. Trends in Ecology & Evolution 27(11): 637-647. | Link |
| Stromdahl EY, Hickling GJ. 2012. Beyond Lyme: Aetiology of tick-borne human diseases with emphasis on the south-eastern United States. Zoonoses and Public Health 59(issue suplement s2): 48-64. | Link |
| Su C et al. 2012. Globally diverse Toxoplasma gondii isolates comprise six major clades originating from a small number of distinct ancestral lineages. PNAS 109(15): 5844-5849. | Link |
| Sullivan A, Agusto F, Bewick S, Lenhart S, Zhao X. 2012. A mathematical model for within-host Toxoplasma gondii invasion dynamics. Mathematical Biosciences and Engineering 9(3): 647-662. | Link |
| Thomas et al. 2012. Dynamic energy-balance model predicting gestational weight gain. The American Journal of Clinical Nutrition 95(1): 115-122. | Link |
| Thomas et al. 2012. Why do individuals not lose more weight from an exercise intervention at a defined dose? An energy balance analysis. Obesity Reviews 13(10): 835-847. | Link |
| Tildesley MJ, Ryan SJ. 2012. Disease prevention versus data privacy: Using landcover maps to inform spatial epidemic models. PLoS Computational Biology 8(11): e1002723. | Link |
| Turchin et al. 2012. A historical database of sociocultural evolution. Cliodynamics: The Journal of Theoretical and Mathematical History 3(2): 271-293. | Link |
| Vargas R. 2012. How a hurricane disturbance influences extreme CO2 fluxes and variance in a tropical forest. Environmental Research Letters 7(3): 035704. | Link |
| Weisrock et al. 2012. Concatenation and concordance in the reconstruction of mouse lemur phylogeny: An empirical demonstration of the effect of allele sampling in phylogenetics. Molecular Biology and Evolution 29(6): 1615-1630. | Link |
| Weitz JS, Wilhelm SW. 2012. Ocean viruses and their effects on microbial communities and biogeochemical cycles. F1000 Biology Reports 4(17). | Link |
| Xia H, Wong K, Zhao X. 2012. A fully coupled model for electromechanics of the heart. Computational and Mathematical Methods in Medicine 2012: Article ID 927279. | Link |
| Xia HN, Garcia GA, Bains J, Wortham DC, Zhao XP. 2012. Matrix of regularity for improving the quality of ECGs. Physiological Measurement 33(9): 1535-1548. | Link |
| Yang Y, Ricarda R, Morawetz JJ, Haevermans T, Aubriot X, Berry PE. 2012. Molecular phylogenetics and classification of Euphorbia subgenus Chamaesyce (Euphorbiaceae). Taxon 61(4): 764-789(26). | Link |
| Yang Y. 2012. Senior Thesis: The Kalman filter combined with Hungarian algorithm successfully tracked fast moving peroxisomes. The Beloit Biologist, Beloit College, Beloit, WI. | |
| Yao JZ, Chu YZ, An R, Guo H. 2012. Understanding product specificity of protein lysine methyltransferases from QM/MM molecular dynamics and free energy simulations: The effects of mutation on SET7/9 beyond the Tyr/Phe switch. Journal of Chemical Information and Modeling 52(2): 449-456. | Link |
| Yin et al. 2012. A framework of integrating GIS and parallel computing for spatial control problems - a case study of wildfire control. International Journal of Geographical Information Science 26(4): 621-641. | Link |
| Yong J. 2012. Deterministic time-inconsistent optimal control problems - an essentially cooperative approach. Acta Mathematicae Applicatae Sinica 28(1): 1-30. | Link |
| Yu Y, Degnan JH, Nakhleh L. 2012. The probability of a gene tree topology within a phylogenetic network with applications to hybridization detection. PLoS Genetics 8(4): 456-465. | Link |
| Zhong P, Lenhart S. 2012. Optimal control of integrodifference equations with growth-harvesting-dispersal order. Discrete and Continuous Dynamical Systems-Series B 17(6): 2281-2298. | Link |
| Zychaluk K, Bruno JF, Clancy D, McClanahan TR, Spencer M. 2012. Data-driven models for regional coral-reef dynamics. Ecology Letters 15(2): 151-158. | Link |
2020 2019 2018 2017 2016 2015 2014 2013 2012 2011 2010 2009 2008
| Publications 2011 | Online |
|---|---|
| Abdelmageed S. 2011. Undergraduate Honors Thesis: Uncertainty analysis of complex dynamical models. Ursinus College. | |
| Abu-Khzam FN, Fernau H, Langston MA, Lee-Cultura S, Stege U. 2011. Charge and reduce: A fixed-parameter algorithm for String-to-String Correction. Discrete Optimization 8(1): 41-49. | Link |
| Agusto FB, Lenhart S, Gumel AB, Odoi A. 2011. Mathematical analysis of a model for the transmission dynamics of bovine tuberculosis. Mathematical Methods in the Applied Sciences 34(15): 1873-1887. | Link |
| Akcay E, Roughgarden J. 2011. The evolution of payoff matrices: Providing incentives to cooperate. Proceedings of the Royal Society B: Biological Sciences 278(1715). | Link |
| Akcay E, Simms E. 2011. Negotiation, sanctions, and context dependency in the legume-rhizobium mutualism. The American Naturalist 178(1): 1-14. | Link |
| Alexanderian A, Gobbert MK, Fister KR, Gaff H, Lenhart S, Schaefer E. 2011. An age-structured model for the spread of epidemic cholera: Analysis and simulation. Nonlinear Analysis-Real World Applications 12(6): 3483-3498. | Link |
| An G, Bartels J, Vodovotz Y. 2011. In silico augmentation of the drug development pipeline: Examples from the study of acute inflammation. Drug Development Research 72(2): 187-200. | Link |
| An G, Christley S. 2011. Agent-based modeling and biomedical ontologies: A roadmap. Wiley Interdisciplinary Reviews: Computational Statistics 3(4): 343-356. | Link |
| Araujo MS, Bolnick DI, Layman CA. 2011. The ecological causes of individual specialisation. Ecology Letters 14(9): 948-958. | Link |
| Barnosky et al. 2011. Has the Earth's sixth mass extinction already arrived?. Nature 471(7336): 51-57. | Link |
| Beckage B, Gross L, Kauffman S. 2011. The limits to prediction in ecological systems. Ecosphere 2(11): article 125. | Link |
| Beckage B, Gross L, Platt WJ. 2011. Grass feedbacks on fire stabilize savannas. Ecological Modelling 222(14): 2227-2233. | Link |
| Bewick S, Stuble KL, Lessard JP, Dunn R, Adler F, Sanders N. 2011. When Climate and Trade-offs Interact: the unbalancing effects of warming on species coexistence. The American Naturalist. | |
| Bewick S, Zhang M, Hamel W. 2011. Passive versus aggressive strategies: A game theoretic analysis of military and immune defense. IEEE Transactions on Systems, Man and Cybernetics - Part A: Systems and Humans, vol. 41(3): 583-588. | Link |
| Bolnick DI, Araujo MS. 2011. Partitioning the relative fitness effects of diet and trophic morphology in the threespine stickleback. Evolutionary Ecology Research 13(5): 439-459. | Link |
| Bolnick et al. 2011. Why intraspecific trait variation matters in community ecology. Trends in Ecology & Evolution 26(4): 183-192. | Link |
| Carmona-Fontaine et al. 2011. Complement fragment C3a controls mutual cell attraction during collective cell migration. Developmental Cell 21(6): 1026-1037. | Link |
| Ceddia MG, Bartlett M, De Lucia C, Perrings C. 2011. On the regulation of spatial externalities: Coexistence between GM and conventional crops in the EU and the 'newcomer principle'. The Australian Journal of Agricultural and Resource Economics 55(1): 126-143. | Link |
| Cooper IA, Gilman RT, Boughman JW. 2011. Sexual dimorphism and speciation on two ecological coins: Patterns from nature and theoretical predictions. Evolution 65(9): 2553-2571. | Link |
| DeAngelis et al. 2011. The effect of travel loss on evolutionarily stable distributions of populations in space. The American Naturalist 178(1): 15-29. | Link |
| Dorazio RM, Gotelli NJ, Ellison AM. 2011. Modern methods of estimating biodiversity from presence-absence surveys. In: Grillo O (ed.), Biodiversity Loss in a Changing Planet, pp. 277-302. ISBN 13:9789533077079. | Link |
| Ellis-Monoghan J, Pangborn G. 2011. Using DNA self-assembly design strategies to motivate graph theory concepts. Mathematical Modelling of Natural Phenomena 6(6): 96-107. | Link |
| Fenichel et al. 2011. Adaptive human behavior in epidemiological models. Proceedings of the National Academy of Sciences 108(15): 6306-6311. | Link |
| Gilman RT, Behm JE. 2011. Hybridization, species collapse, and species reemergence after disturbance to premating mechanisms of reproductive isolation. Evolution 65(9): 2592-2605. | Link |
| Gonzalez PA, Lee S, Velazquez L, Castillo-Chavez C. 2011. A note on the use of optimal control on a discrete time model of influenza dynamics. Mathematical Biosciences and Engineering 8(1): 183-197. | Link |
| Gonzalez-Parra PA. 2011. Dissertation: Optimal Control applied to a discrete influenza model. University of Texas, El Paso. | Link |
| Guo Z, Adomas AB, Jackson ED, Qin H, Townsend JP. 2011. SIR2 and other genes are abundantly expressed in long-lived natural segregants for replicative aging of the budding yeast Saccharomyces cerevisiae. FEMS Yeast Res 11(4): 345-55. | Link |
| Hallam TG, Federico P. 2011. The panzootic white-nose syndrome: An environmentally constrained disease?. Transboundary and Emerging Diseases 59(3): 269-278. | Link |
| Hallam TG, McCracken GF. 2011. Management of the panzootic white-nose syndrome through culling of bats. Conservation Biology 25(1): 189-194. | Link |
| Hartvigsen G. 2011. Using R to build and assess network models in biology. Mathematical Modelling of Natural Phenomena 6(6): 61-75. | Link |
| Hinkelmann F, Murrugarra D, Laubenbacher R, Jarrah AS. 2011. A mathematical framework for agent based models of complex biological networks. Bulletin of Mathematical Biology 73(7): 1583-1602. | Link |
| Horan RD, Fenichel EP, Melstrom RT. 2011. Wildlife disease bioeconomics. International Review of Environmental and Resource Economics 5(1): 23-61. | |
| Horan RD, Melstrom RT. 2011. No sympathy for the devil. Journal of Environmental Economics and Management 62(3): 367-385. | Link |
| Hsieh YH, Ma S, Hernandez JXV, Lee VJ, Lim WY. 2011. Early Outbreak of 2009 Influenza A (H1N1) in Mexico Prior to Identification of pH1N1 Virus. PLoS ONE 6(8): e23853. | Link |
| Hsieh Y-H, Ma S, Velasco Hernandez JX, Lee VJ, Lim WY. 2011. Early Outbreak of 2009 Influenza A (H1N1) in Mexico Prior to Identification of pH1N1 Virus. PLoS ONE 6(8): e23853. | Link |
| Ingram T, Stutz WE, Bolnick DI. 2011. Does Intraspecific Size Variation in a Predator Affect Its Diet Diversity and Top-Down Control of Prey?. PLoS ONE 6(6): e20782. | Link |
| Jordan-Cooley WC, Lipcius RN, Shaw LB, Shen J, Shi J. 2011. Bistability in a differential equation model of oyster population and sediment volume. Journal of Theoretical Biology 289: 1. | Link |
| Kakai et al. 2011. Ecological adaptation of the shea butter tree (Vitellaria paradoxa CF Gaertn.) along climatic gradient in Benin, West Africa. African Journal of Ecology 49(4): 440-449. | Link |
| Kohler T, Hooper PL, Bocinsky RK, Kobti Z. 2011. The coevolution of group size and leadership: An agent-based public goods model for prehispanic pueblo societies. Advances in Complex Systems 15(1): 1150007. | Link |
| Konrad A, Teufel AI, Grahnen JA, Liberles DA. 2011. Toward a general model for the evolutionary dynamics of gene duplicates. Genome Biology and Evolution 3: 1197-1209. | Link |
| Krakauer DC, Page K, Flack J. 2011. The immuno-dynamics of conflict intervention in social systems. PLoS ONE 6(8): e22709. | Link |
| Krivan V. 2011. On the Gause predator-prey model with a refuge: A fresh look at the history. Journal of Theoretical Biology 274(1): 67-73. | Link |
| Lennox GD, Armsworth PR. 2011. Suitability of short or long conservation contracts under ecological and socio-economic uncertainty. Ecological Modelling 222(15): 2856-2866. | Link |
| Lewis CL. 2011. Mathematical models with antibody and cytotoxic T lymphocyte responses due to hantavirus infections in rodents and humans. Texas Tech University. | |
| Liu L, Yu L, Kalavacharla V, Liu Z. 2011. A Bayesian model for gene family evolution. BMC Bioinformatics 12: 426. | Link |
| Logdberg F. 2011. Dissertation: Population dynamics in variable environments - impacts of noise colour and synchrony. Linkoping Studies in Science and Technology, Dissertation No. 1416, Linkoping University, Sweden. . | |
| Loladze I, Elser JJ. 2011. The origins of the Redfield nitrogen-to-phosphorus ratio are in a homoeostatic protein-to-rRNA ratio. Ecology Letters 14(3): 244-250. | Link |
| Mao Y. 2011. Dynamical basis for drug resistance of HIV-1 protease. BMC Structural Biology 11: 31. | Link |
| Mao Y. 2011. Dynamics studies of luciferase using elastic network model: How the sequence distribution of luciferase determines its color. Protein Engineering, Design and Selection 24(4): 341-349. | Link |
| Martcheva M. 2011. An immuno-epidemiological model of paratuberculosis. AIP Conference Proceedings 1404(1): 176-183. | |
| Massol F, Gravel D, Mouquet N, Cadotte MW, Fukami T, Leibold MA. 2011. Linking community and ecosystem dynamics through spatial ecology. Ecology Letters 14(3): 313-323. | Link |
| Mesterton-Gibbons M, Gavrilets S, Gravner J, Akcay E. 2011. Models of coalition or alliance formation. Journal of Theoretical Biology 274(1): 187-204. | Link |
| Mesterton-Gibbons M, Sherratt TN. 2011. Information, variance and cooperation: Minimal models. Dynamic Games and Applications 1(3): 419-439. | Link |
| Moran EV, Clark JS. 2011. Estimating seed and pollen movement in a monoecious plant: A hierarchical Bayesian approach integrating genetic and ecological data. Molecular Ecology 20(6): 1248-1262. | Link |
| Neilan RM, Lenhart S. 2011. Optimal vaccine distribution in a spatiotemporal epidemic model with an application to rabies and raccoons. Journal of Mathematical Analysis and Applications 378(2): 603-619. | Link |
| Parshad RD, Agusto FB. 2011. Global dynamics of a PDE model for Aedes aegypti mosquitoe incorporating female sexual preference. Dynamics of Partial Differential Equations 8(4): 311-343. | |
| Rao AR, Cecchi GA. 2011. The effects of feedback and lateral connections on perceptual processing: A study using oscillatory networks. 2011 International Joint Conference on Neural Networks (IJCNN) 1177-1184. | |
| Riechert SE, Leander RN, Lenhart SM. 2011. A role-playing exercise that demonstrates the process of evolution by natural selection: Caching squirrels in a world of pilferers. The American Biology Teacher 73(4): 208-212. | Link |
| Sackett TE, Record S, Bewick S, Baiser B, Sanders NJ, Ellison AM. 2011. Response of macroarthropod assemblages to the loss of hemlock (Tsuga canadensis), a foundation species. Ecosphere 2(7): UNSP 74. | Link |
| Schreiber SJ, Burger R, Bolnick DI. 2011. The community effects of phenotypic and genetic variation within a predator population. Ecology 92(8): 1582-1593. | Link |
| Sekercioglu et al. 2011. Turkey's globally important biodiversity in crisis. Biological Conservation 144(12): 2752-2769. | |
| Shah P, Gilchrist MA. 2011. Explaining complex codon usage patterns with selection for translational efficiency, mutation bias, and genetic drift. Proceedings of the National Academy of Sciences 108(25): 10231-10236. | Link |
| Shah P. 2011. Dissertation: On the evolution of codon usage bias. Univ. of Tennessee, Knoxville. | |
| Smith et al. 2011. Comparative phylogeography of a coevolved community: Concerted population expansions in Joshua trees and four Yucca moths. PLoS ONE 6(10): e25628. | Link |
| Tannenbaum L. 2011. Undergraduate Honors Thesis: Difference and differential equations models of Vancomycin-resistant Enterococci. Ursinus College. | |
| Thibert-Plante X, Hendry AP. 2011. Factors influencing progress toward sympatric speciation. Journal of Evolutionary Biology 24(10): 2186-2196. | Link |
| Thibert-Plante X, Hendry AP. 2011. The consequences of phenotypic plasticity for ecological speciation. Journal of Evolutionary Biology 24(2): 326-342. | Link |
| Ubeda F, Gardner A. 2011. A model for genomic imprinting in the social brain: Adults. Evolution 65(2): 462-475. | Link |
| Ubeda F, Wilkins JF. 2011. The Red Queen theory of recombination hotspots. Journal of Evolutionary Biology 24(3): 541-553. | Link |
| Vasseur DA, Amarasekare P, Rudolf VHW, Levine JM. 2011. Eco-evolutionary dynamics enable coexistence via neighbor-dependent selection. The American Naturalist 178(5): E96-E109. | Link |
| Velasco-Hernandez JX, Leite MCA. 2011. A model for the A(H1N1) epidemic in Mexico, including social isolation. Salud Publica de Mexico 53(1): 1-8. | Link |
| Yong J. 2011. A deterministic linear quadratic time-inconsistent optimal control problem. Mathematical Control and Related Fields 1(1): 83-118. | Link |
2020 2019 2018 2017 2016 2015 2014 2013 2012 2011 2010 2009 2008
| Publications 2010 | Online |
|---|---|
| Agusto FB, Ogunye OR. 2010. Avian influenza optimal seasonal vaccination strategy. ANZIAM Journal 51(4): 394-405. | Link |
| Agusto FB, Okosun KO. 2010. Optimal seasonal biocontrol for Eichhornia crassipes. International Journal of Biomathematics 3(3): 1-15. | Link |
| An G. 2010. Closing the scientific loop: Bridging correlation and causality in the petaflop age. Science Translational Medicine 2(41): 41ps34. | Link |
| An G. 2010. Translational systems biology using an agent-based approach for dynamic knowledge representation: An evolutionary paradigm for biomedical research. Wound Repair and Regeneration 18(1): 8-12. | Link |
| Beckage B, Godsoe W, Gross L, Platt W, Simberloff D. 2010. Individual variation slows competitive exclusion. Science, e-letter published online 14 July 2010. | Link |
| Benson B. 2010. Dissertation: White nose syndrome and migration of Delaware's bats. Delaware State University. | |
| Bodine EN. 2010. Dissertation: Optimal control of species conservation strategies. University of Tennessee, Knoxville, TN. | |
| Brock WA, Kinzig AP, Perrings C. 2010. Modeling the economics of biodiversity and environmental heterogeneity. Environmental and Resource Economics 46(1): 43-58. | Link |
| Canner J. 2010. Dissertation: The population ecology of ant-dispersed plants in space and time. North Carolina State University, Raleigh, NC. | |
| Carrillo-Valenzo et al. 2010. Evolution of dengue virus in Mexico is characterized by frequent lineage replacement. Archives of Virology 155(9): 1401-1412. | Link |
| Collins C, Fister KR, Williams M. 2010. Optimal control of a cancer cell model with delay. Mathematical Modelling of Natural Phenomena 5(3): 63-75. | Link |
| Cusimano N, Renner SS. 2010. Slowdowns in diversification rates from real phylogenies may not be real. Systematic Biology 59(4): 458-464. | Link |
| Ding W, Lenhart S. 2010. Introduction to optimal control for discrete time models with an application to disease modeling. Modeling Paradigms and Analysis of Disease Transmission Models DIMACS Series in Discrete Mathematics and Theoretical Computer Science 75: 109-119. | Link |
| D'Onofrio D, An G. 2010. A comparative approach for the investigation of biological information processing: An examination of the structure and function of computer hard drives and DNA. Theoretical Biology and Medical Modelling 7: 3. | Link |
| Duncan SI, Bishop P, Lenhart S. 2010. Preparing the "New" Biologist of the Future: Student Research at the Interface of Mathematics and Biology. CBE - Life Sciences Education 9(3): 311-315. | Link |
| Fenichel EP, Horan RD, Hickling GJ. 2010. Bioeconomic management of invasive vector-borne diseases. Biological Invasions 12(9): 2877-2893. | Link |
| Fenichel EP, Horan RD, Hickling GJ. 2010. Management of infectious wildlife diseases: Bridging conventional and bioeconomic approaches. Ecological Applications 20(4): 903-914. | Link |
| Frick et al. 2010. A common bat faces rapid extinction in the northeastern US from fungal pathogen. Science. | |
| Frick et al. 2010. An emerging disease causes regional population collapse of a common North American bat species. Science 329(5992): 679-82. | Link |
| Frick WF, Reynolds DS, Kunz TH. 2010. Influence of climate and reproductive timing on demography of little brown myotis Myotis lucifugus. Journal of Animal Ecology 79(1): 128-136. | Link |
| Fujitani Y, Kawai J, Kobayashi I. 2010. Random-walk mechanism in the genetic recombination. Advances in Experimental Medicine and Biology 680: 275-82. | Link |
| Furuta Y, Abe K, Kobayashi I. 2010. Genome comparison and context analysis reveals putative mobile forms of restriction-modification systems and related rearrangements. Nucleic Acids Research 38(7): 2428-2443. | Link |
| Gardner A. 2010. Sex-biased dispersal of adults mediates the evolution of altruism among juveniles. Journal of Theoretical Biology 262(2): 339-345. | Link |
| Gavrilets S, Anderson D, Turchin P. 2010. Cycling in the complexity of early societies. Cliodynamics: The Journal of Theoretical and Mathematical History 1(1): 58-80. | Link |
| Gavrilets S. 2010. Rapid transition towards the division of labor via evolution of developmental plasticity. PLoS Computational Biology 6(6): e1000805. | Link |
| Giraud T, Gladieux P, Gavrilets S. 2010. Linking the emergence of fungal plant diseases with ecological speciation. Trends in Ecology & Evolution 25(7): 387-395. | Link |
| Godsoe W, Yoder JB, Smith CI, Drummond CS, Pellmyr O. 2010. Absence of population-level phenotype matching in an obligate pollination mutualism. Journal of Evolutionary Biology 23(12): 2739-2746. | Link |
| Godsoe W. 2010. I can't define the niche but I know it when I see it: A formal link between statistical theory and the ecological niche. Oikos 119(1): 53-60. | Link |
| Godsoe W. 2010. Regional variation exaggerates ecological divergence in niche models. Systematic Biology 59(3): 298-306. | Link |
| Gonzalez-Parra P, Velazquez L, Villalobos MC, Castillo-Chavez C. 2010. Optimal Control applied to a discrete influenza model. In: Angeli F (Ed.), Operations Research for Patient-Centered Health Care Delivery, Proceedings of the XXXVI International ORAHS Conference, ISBN 13:9788856825954. | Link |
| Gotelli NJ, Dorazio RM, Ellison AM, Grossman GD. 2010. Detecting temporal trends in species assemblages with bootstrapping procedures and hierarchical models. Philosophical Transactions of the Royal Society B: Biological Sciences 365(1558): 3621-3631. | Link |
| Hamer SA, Tsao JI, Walker ED, Hickling GJ. 2010. Invasion of the Lyme Disease vector Ixodes scapularis: Implications for Borrelia burgdorferi endemicity. Ecohealth 7(1): 47-63. | Link |
| Harp JR, Gilchrist MA, Onami TM. 2010. Memory T cells are enriched in lymph nodes of selectin-ligand-deficient mice. Journal of Immunology 185(10): 5751-5761. | Link |
| Horan RD, Fenichel EP, Wolf CA, Gramig BM. 2010. Managing infectious animal disease systems. Annual Review of Resource Economics 2010(2): 101-124. | Link |
| Khan et al. 2010. A putative mobile genetic element carrying a novel type IIF restriction-modification system (PluTI). Nucleic Acids Research 38(9): 3019-3030. | Link |
| Krivan V. 2010. Evolutionary stability of optimal foraging Partial preferences in the diet and patch models. Journal of Theoretical Biology 267(4): 486-494. | Link |
| Lindstrom T. 2010. Dissertation: Spatial spread of organisms: Modelling ecological and epidemiological processes. Linkoping University, Sweden. | |
| Meyer K, Kirkpatrick M. 2010. Better Estimates of Genetic Covariance Matrices by "Bending'' Using Penalized Maximum Likelihood. Genetics 185(3): 1097-1110. | Link |
| Mi et al. 2010. Translational systems biology of inflammation: Potential applications to personalized medicine. Personalized Medicine 7(5): 549-559. | Link |
| Miller Neilan R, Lenhart S. 2010. An introduction to optimal control with an application in disease modeling. DIMACS Series in Discrete Mathematics and Theoretical Computer Science 75: 67-81. | Link |
| Much K. 2010. Undergraduate Honors Thesis: Mathematical modeling and sensitivity analysis of antibiotic resistance. Ursinus College. | |
| Neilan RLM, Schaefer E, Gaff H, Fister KR, Lenhart S. 2010. Modeling optimal intervention strategies for cholera. Bulletin of Mathematical Biology 72(8): 2004-2018. | Link |
| Ozpolat BD, Akcay E, Somel N, Somel M. 2010. Bringing the understanding of evolution to Turkish public: A volunteer organization model for developing countries. Developmental Biology 344(1): 439. | Link |
| Pannkuk EL. 2010. Dissertation: Fungal metabolism of chiropteran integument and biomechanical damage by geomyces species. | |
| Perrings C, Burgiel S, Lonsdale WM, Mooney H, Williamson M. 2010. International cooperation in the solution to trade-related invasive species risks. Annals of the New York Academy of Sciences 1195: 198-212. | Link |
| Perrings C. 2010. Exotic effects of capital accumulation. Proceedings of the National Academy of Sciences 107(27): 12063-12064. | Link |
| Potochnik A. 2010. Modeling social and evolutionary games. Studies in History and Philosophy of Biological and Biomedical Sciences. | |
| Rice WR, Gavrilets S, Friberg U. 2010. The evolution of sex-specific grandparental harm. roceedings of the Royal Society B: Biological Sciences 277(1694): 2727-2753. | Link |
| Riechert SE, Post BK. 2010. From skeletons to bridges & other STEM enrichment exercises for high school biology. The American Biology Teacher 72(1): 20-22. | Link |
| Roughgarden J, Akcay E. 2010. Do we need a Sexual Selection 2.0?. Animal Behaviour 79(3): e1-e4. | Link |
| Roughgarden J, Akcay E. 2010. Final response: Sexual selection needs an alternative. Animal Behaviour 79(3): e18-e23. | Link |
| Sebastian P, Schaefer H, Telford IRH, Renner SS. 2010. Cucumber (Cucumis sativus) and melon (C. melo) have numerous wild relatives in Asia and Australia, and the sister species of melon is from Australia. Proceedings of the National Academy of Sciences 107(32): 14269-14273. | Link |
| Shah P, Gilchrist MA. 2010. Effect of correlated tRNA abundances on translation errors and evolution of codon usage bias. PLoS Genetics 6(9): e1001128. | Link |
| Shah P, Gilchrist MA. 2010. Is thermosensing property of RNA thermometers unique?. PLoS ONE 5(7): e1130. | Link |
| Slocum MG, Beckage B, Platt WJ, Orzell SL, Taylor W. 2010. Effect of climate on wildfire size: A cross-scale analysis. Ecosystems 13(6): 828-840. | Link |
| Smith? RJ, Okano JT, Kahn JS, Bodine EN, Blower S. 2010. Evolutionary dynamics of complex networks of HIV drug-resistant strains: The case of San Francisco. Science 327(5966): 697-701. | Link |
| Tang G, Beckage B. 2010. Projecting the distribution of forests in New England in response to climate change. Diversity and Distributions 16(1): 144-158. | Link |
| Thibert-Plante X, Hendry AP. 2010. When can ecological speciation be detected with neutral loci?. Molecular Ecology 19(11): 2301. | Link |
| Turchin P. 2010. Warfare and the evolution of social complexity: A multilevel-selection approach. Structure and Dynamics 4(3): 1-37. | Link |
| Ubeda F, Gardner A. 2010. A model for genomic imprinting in the social brain: Juveniles. Evolution 64(9): 2587-2600. | Link |
| Vodovotz et al. 2010. Translational systems approaches to the biology of inflammation and healing. Immunopharmacol Immunotoxicology 32(2): 181-195. | Link |
| Wise SM. 2010. Unconditionally stable finite difference, nonlinear multigrid simulation of the Cahn-Hilliard-Hele-Shaw system of equations. Journal of Scientific Computing 44(1): 38-68. | Link |
| Yoder et al. 2010. Ecological opportunity and the origin of adaptive radiations. Journal of Evolutionary Biology 23(8): 1581-1596. | Link |
2020 2019 2018 2017 2016 2015 2014 2013 2012 2011 2010 2009 2008
| Publications 2009 | Online |
|---|---|
| Akcay E, Van Cleve J, Feldman MW, Roughgarden J. 2009. A theory for the evolution of other-regard integrating proximate and ultimate perspectives. Proceedings of the National Academy of Sciences 106(45): 19061-19066. | Link |
| Araujo MS, Bolnick DI, Martinelli LA, Giaretta AA, Dos Reis SF. 2009. Individual-level diet variation in four species of Brazilian frogs. Journal of Animal Ecology 78(4): 848-856. | Link |
| Beckage B, Platt WJ, Gross LI. 2009. Vegetation, fire, and feedbacks: A disturbance-mediated model of savannas. The American Naturalist 174(6): 805-818. | Link |
| Castiglione F. 2009. Agent Based Modeling and Simulation, Introduction to. In: Meyers R (ed.), Encyclopedia of Complexity and Systems Science 1, pp. 197-200. Springer: New York. | Link |
| Duenez-Guzman EA, Mavarez J, Vose MD, Gavrilets S. 2009. Case studies and mathematical models of ecological speciation. 4. Hybrid speciation in butterflies in a jungle. Evolution 63(10): 2611-2626. | Link |
| Duenez-Guzman EA, Vose AD, Vose MD, Gavrilets S. 2009. Simulating population genetics on the XT5. Published Collection: Proceedings of the Compute the Future Cray Users Group Conference, Atlanta, GA. | Link |
| Fitzpatrick BM, Fordyce JA, Gavrilets S. 2009. Pattern, process and geographic modes of speciation. Journal of Evolutionary Biology 22(11): 2332-2341. | Link |
| Gavrilets S, Losos JB. 2009. Adaptive radiation: Contrasting theory with data. Science 323(5915): 732-737. | Link |
| Gavrilets S, Vose A. 2009. Dynamic patterns of adaptive radiation: Evolution of mating preferences. In: Butlin RK, Bridle J, Schluter D (eds.), Speciation and Patterns of Diversity, Cambridge University Press, pp. 102-126. | Link |
| Handa N, Ichige A, Kobayashi I. 2009. Contribution of RecFOR machinery of homologous recombination to cell survival after loss of a restriction-modification gene complex. Microbiology 155(7): 2320-2332. | Link |
| Kobayashi I, Handa N. 2009. DNA double-strand breaks and their consequences in bacteria. Encyclopedia of Life Sciences, John Wiley & Sons, Ltd, ISBN 13:9780470015902. | Link |
| Reichard JD, Kunz TH. 2009. White-nose syndrome inflicts lasting injuries to the wings of little brown myotis (Myotis lucifugus). Acta Chiropterologica 11(2): 457-464. | Link |
| Rice WR, Gavrilets S, Friberg U. 2009. Sexually antagonistic chromosomal cuckoos. Biology Letters 5(5): 686-688. | Link |
| Sadedin S, Hollander J, Panova M, Johannesson K, Gavrilets S. 2009. Case studies and mathematical models of ecological speciation. 3: Ecotype formation in a Swedish snail. Molecular Ecology 18(19): 4006-4023. | Link |
| Travis CB, Gross LJ, Johnson BA. 2009. Tracking the gender pay gap: A case study. Psychology of Women Quarterly 33(4): 410-418. | Link |
| Yahara K, Fukuyo M, Sasaki A, Kobayashi I. 2009. Evolutionary maintenance of selfish homing endonuclease genes in the absence of horizontal transfer. Proceedings of the National Academy of Sciences 106(44): 18861-18866. | Link |
2020 2019 2018 2017 2016 2015 2014 2013 2012 2011 2010 2009 2008
| Publications 2008 | Online |
|---|---|
| Gavrilets S, Duenez-Guzman EA, Vose MD. 2008. Dynamics of alliance formation and the egalitarian revolution. PLoS ONE 3(10): e3293. | Link |
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