| Description | Participants | Agenda | Software | Products |
|---|
NIMBioS Tutorial: Migration from the Desktop:
HPC application of R and other codes for biological research
Agenda and Presentation Links
Monday, May 9th
| 8:15 | Breakfast |
| 9:00 | Greeting from NIMBioS |
| 9:30 | Introduction to Parallel Computing |
| 10:15 | Break |
| 10:30 | Challenges of HPC |
| Part 1: Introduction | |
| Part 2: HPC Utilities | |
| Scientific Visualization in HPC Example files (.tar) | |
| Visit Tutorial Sample data set (.cdf) | |
| 11:15 | Logging on to NAUTILUS |
| 11:45 | Lunch at NIMBioS |
| 12:45 | “What are your Development Goals?” |
| 1:15 | Case Study: Analysis of the All Taxa BioDiversity Inventory from the GSMNP |
| 1:45 | "Black Box" code and what you can get through data analysis |
| 3:15 | Break |
| 3:30 | HPC Lab: |
| EDEN | |
| Examples and submissions | |
| 5:30 | Meet and Greet with Dinner at NIMBioS |
Tuesday, May 10th
| 8:15 | Breakfast | |
| 9:00 | Case Study: Application of R in Biology | |
| 9:30 | High Performance Computing in R | |
| "Open Box" application | ||
| R HPC limitations and application | ||
| 10:30 | Break | |
| 10:45 | A little paperwork | |
| 10:55 | Breakout Groups | |
| Power, 1st Steps, Biology Stories | ||
| 12:00 | Lunch at NIMBioS | |
| 1:00 | Visualization Lab: | |
| Visit | ||
| Paraview | ||
| 3:00 | Break | |
| 3:30 | Visualization Lab: R (click below to download program and data files): | |
| R_Graphics.R mydata100.RData | ||
| Quick-R Example on Nautilus (zip file) | ||
| 5:00 | Dinner on your own |
Wednesday, May 11th
| 8:15 | Breakfast |
| 9:00 | Data Management |
| 10:15 | Picture |
| 10:30 | Break |
| 10:45 | Last Minute Wisdom (.txt) |
| 12:00 | Box Lunches provided |
| 2:00 | First flights out |
For more information, contact:
Eric Carr
HPC Specialist, NIMBioS
Email: carr@nimbios.org
Phone: (865) 974-0223 Fax: (865) 974-9300
NIMBioS
1122 Volunteer Blvd., Suite 106
University of Tennessee
Knoxville,
TN 37996-3410
PH: (865) 974-9334
FAX: (865) 974-9461
Contact NIMBioS
From 2008 until early 2021, NIMBioS was supported by the
National Science Foundation
through NSF Award #DBI-1300426, with additional support from
The University of Tennessee, Knoxville. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.
©2008-2021 National Institute for Mathematical and Biological Synthesis. All rights reserved.